Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021937X
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.9  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  27   5.0  
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   27   8.8  
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   27   8.8  

>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 60  PVSPGQVGEQRLSQEGWDLLTTARAPPKETLTTQE 164
           PVSPG  G+  +  +GW+    +R PP+   T  E
Sbjct: 237 PVSPGTAGDVPVEIQGWENAPESR-PPRARATPPE 270


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 401  HRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAPVTVLDELD 276
            HR+RP +  +    P+    DAF +      R   TV+D  D
Sbjct: 978  HRRRPSNTPSAAKRPIKMTEDAFPTTGTSGGRQKATVIDRAD 1019


>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  GPKPFQFHQDRWASKGSAKRGGI 114
           G +PF +  DRWA  G A  GG+
Sbjct: 154 GKRPFLYRGDRWAGHGGA--GGV 174


>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 353 TFALDAFSSNTRGRLRAPVTVLDE 282
           T + D FSS T GRLR PV+  D+
Sbjct: 340 TLSYDVFSS-TAGRLRVPVSCYDD 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,674,212
Number of Sequences: 59808
Number of extensions: 204593
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)