BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021937X (434 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X89754-1|CAA61901.1| 140|Homo sapiens T cell antigen receptor b... 35 0.14 X74844-1|CAA52837.1| 135|Homo sapiens T-cell receptor beta chai... 35 0.14 X58805-1|CAA41611.1| 114|Homo sapiens V beta immunoglobulin pro... 35 0.14 U66060-15|AAC13332.1| 116|Homo sapiens V_segment translation pr... 35 0.14 M27386-1|AAD15190.1| 121|Homo sapiens T-cell receptor beta prot... 35 0.14 M27385-1|AAD15187.1| 133|Homo sapiens T-cell receptor beta prot... 35 0.14 L34734-1|AAA82682.1| 311|Homo sapiens T-cell receptor beta prot... 35 0.14 AF009661-1|AAB63895.1| 116|Homo sapiens TCRBV6S4 protein. 35 0.14 M15564-1|AAA61027.1| 310|Homo sapiens TCRB protein. 34 0.18 X64742-1|CAA46005.1| 133|Homo sapiens T cell receptor V-beta 6... 34 0.24 D13085-1|BAA02397.1| 114|Homo sapiens T-cell receptor beta-chai... 34 0.24 AF009663-17|AAB63907.1| 116|Homo sapiens TCRBV6S4 protein. 34 0.24 U66060-10|AAC13329.1| 116|Homo sapiens V_segment translation pr... 32 0.98 L14483-1|AAA61267.1| 96|Homo sapiens T-cell receptor V beta ch... 32 0.98 AF009663-12|AAB63905.1| 116|Homo sapiens TCRBV6S6 protein. 32 0.98 X61441-1|CAA43681.1| 116|Homo sapiens TCR V-beta 6.3 protein. 30 4.0 U66060-13|AAC13330.1| 116|Homo sapiens V_segment translation pr... 30 4.0 U66060-2|AAC13324.1| 116|Homo sapiens V_segment translation pro... 30 4.0 M27384-1|AAD15184.1| 130|Homo sapiens T-cell receptor beta prot... 30 4.0 M27383-1|AAD15181.1| 139|Homo sapiens T-cell receptor beta prot... 30 4.0 M14260-1|AAA60686.1| 133|Homo sapiens TCRB protein. 30 4.0 M11953-1|AAA60702.1| 115|Homo sapiens protein ( Human T-cell re... 30 4.0 M11952-1|AAA61024.1| 134|Homo sapiens protein ( Human T-cell re... 30 4.0 L14432-1|AAA61262.1| 96|Homo sapiens T-cell receptor V beta ch... 30 4.0 L14431-1|AAA61261.1| 95|Homo sapiens T-cell receptor V beta ch... 30 4.0 L13762-1|AAA61260.1| 95|Homo sapiens T-cell receptor V beta c... 30 4.0 AF542062-1|AAN28670.1| 128|Homo sapiens T-cell receptor beta-ch... 30 4.0 AF009663-15|AAB63906.1| 116|Homo sapiens TCRBV6S2 protein. 30 4.0 AF009663-3|AAB63903.1| 116|Homo sapiens TCRBV6S8 protein. 30 4.0 AF009662-2|AAC18431.1| 116|Homo sapiens TCRBV6S8 protein. 30 4.0 >X89754-1|CAA61901.1| 140|Homo sapiens T cell antigen receptor beta chain protein. Length = 140 Score = 34.7 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 17 DHADTGVSQNPRHKITKRGQNVTFRCDPISEHNR 50 >X74844-1|CAA52837.1| 135|Homo sapiens T-cell receptor beta chain protein. Length = 135 Score = 34.7 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 9 DHADTGVSQNPRHKITKRGQNVTFRCDPISEHNR 42 >X58805-1|CAA41611.1| 114|Homo sapiens V beta immunoglobulin protein. Length = 114 Score = 34.7 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 17 DHADTGVSQNPRHKITKRGQNVTFRCDPISEHNR 50 >U66060-15|AAC13332.1| 116|Homo sapiens V_segment translation product protein. Length = 116 Score = 34.7 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 17 DHADTGVSQNPRHKITKRGQNVTFRCDPISEHNR 50 >M27386-1|AAD15190.1| 121|Homo sapiens T-cell receptor beta protein. Length = 121 Score = 34.7 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 4 DHADTGVSQNPRHKITKRGQNVTFRCDPISEHNR 37 >M27385-1|AAD15187.1| 133|Homo sapiens T-cell receptor beta protein. Length = 133 Score = 34.7 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 9 DHADTGVSQNPRHKITKRGQNVTFRCDPISEHNR 42 >L34734-1|AAA82682.1| 311|Homo sapiens T-cell receptor beta protein. Length = 311 Score = 34.7 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 17 DHADTGVSQNPRHKITKRGQNVTFRCDPISEHNR 50 >AF009661-1|AAB63895.1| 116|Homo sapiens TCRBV6S4 protein. Length = 116 Score = 34.7 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 17 DHADTGVSQNPRHKITKRGQNVTFRCDPISEHNR 50 >M15564-1|AAA61027.1| 310|Homo sapiens TCRB protein. Length = 310 Score = 34.3 bits (75), Expect = 0.18 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 17 DHADTGVSQNPRHNITKRGQNVTFRCDPISEHNR 50 >X64742-1|CAA46005.1| 133|Homo sapiens T cell receptor V-beta 6.9b protein. Length = 133 Score = 33.9 bits (74), Expect = 0.24 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 9 DHADTGVSQDPRHKITKRGQNVTFRCDPISEHNR 42 >D13085-1|BAA02397.1| 114|Homo sapiens T-cell receptor beta-chain V region protein. Length = 114 Score = 33.9 bits (74), Expect = 0.24 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 17 DHADTGVSQDPRHKITKRGQNVTFRCDPISEHNR 50 >AF009663-17|AAB63907.1| 116|Homo sapiens TCRBV6S4 protein. Length = 116 Score = 33.9 bits (74), Expect = 0.24 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318 DHA G Q PRH + +R VTF D S + R Sbjct: 17 DHADTGVSQDPRHKITKRGQNVTFRCDPISEHNR 50 >U66060-10|AAC13329.1| 116|Homo sapiens V_segment translation product protein. Length = 116 Score = 31.9 bits (69), Expect = 0.98 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ + +R VT D SS+ Sbjct: 17 DHTGAGVSQSPRYKVTKRGQDVTLRCDPISSH 48 >L14483-1|AAA61267.1| 96|Homo sapiens T-cell receptor V beta chain 6.14 protein. Length = 96 Score = 31.9 bits (69), Expect = 0.98 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ + +R VT D SS+ Sbjct: 7 DHTGAGVSQSPRYKVTKRGQDVTLRCDPISSH 38 >AF009663-12|AAB63905.1| 116|Homo sapiens TCRBV6S6 protein. Length = 116 Score = 31.9 bits (69), Expect = 0.98 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ + +R VT D SS+ Sbjct: 17 DHTGAGVSQSPRYKVTKRGQDVTLRCDPISSH 48 >X61441-1|CAA43681.1| 116|Homo sapiens TCR V-beta 6.3 protein. Length = 116 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 48 >U66060-13|AAC13330.1| 116|Homo sapiens V_segment translation product protein. Length = 116 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 48 >U66060-2|AAC13324.1| 116|Homo sapiens V_segment translation product protein. Length = 116 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D+ S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGRDVALRCDSISGH 48 >M27384-1|AAD15184.1| 130|Homo sapiens T-cell receptor beta protein. Length = 130 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 6 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 37 >M27383-1|AAD15181.1| 139|Homo sapiens T-cell receptor beta protein. Length = 139 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 48 >M14260-1|AAA60686.1| 133|Homo sapiens TCRB protein. Length = 133 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 48 >M11953-1|AAA60702.1| 115|Homo sapiens protein ( Human T-cell receptor germline beta chain gene V-region (V) V-beta-ATL12-2. ). Length = 115 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 48 >M11952-1|AAA61024.1| 134|Homo sapiens protein ( Human T-cell receptor rearranged beta chain gene V-region (V-D-J) V-beta-ATL12-2. ). Length = 134 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 48 >L14432-1|AAA61262.1| 96|Homo sapiens T-cell receptor V beta chain 6.11 protein. Length = 96 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D+ S + Sbjct: 7 DHTGAGVSQSPRYKVAKRGRDVALRCDSISGH 38 >L14431-1|AAA61261.1| 95|Homo sapiens T-cell receptor V beta chain 6.11 protein. Length = 95 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D+ S + Sbjct: 7 DHTGAGVSQSPRYKVAKRGRDVALRCDSISGH 38 >L13762-1|AAA61260.1| 95|Homo sapiens T-cell receptor V beta chain 6.11 protein. Length = 95 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D+ S + Sbjct: 7 DHTGAGVSQSPRYKVAKRGRDVALRCDSISGH 38 >AF542062-1|AAN28670.1| 128|Homo sapiens T-cell receptor beta-chain V-region protein. Length = 128 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 48 >AF009663-15|AAB63906.1| 116|Homo sapiens TCRBV6S2 protein. Length = 116 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGQDVALRCDPISGH 48 >AF009663-3|AAB63903.1| 116|Homo sapiens TCRBV6S8 protein. Length = 116 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D+ S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGRDVALRCDSISGH 48 >AF009662-2|AAC18431.1| 116|Homo sapiens TCRBV6S8 protein. Length = 116 Score = 29.9 bits (64), Expect = 4.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSN 324 DH GAG Q PR+ +A+R V D+ S + Sbjct: 17 DHTGAGVSQSPRYKVAKRGRDVALRCDSISGH 48 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 56,857,582 Number of Sequences: 237096 Number of extensions: 1029885 Number of successful extensions: 2445 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2445 length of database: 76,859,062 effective HSP length: 83 effective length of database: 57,180,094 effective search space used: 3487985734 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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