Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021937X
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    26   0.16 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    26   0.16 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 345 CKGYWI*SFRKDVSWALTVTGSCMI 419
           CKG++  + RKD+S+A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 345 CKGYWI*SFRKDVSWALTVTGSCMI 419
           CKG++  + RKD+S+A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -1

Query: 365 SDPVTFALDAFSSNTRGRLRAPVTVLDELDKEVDVQPPHASAR 237
           S  V  A    SS   GR+      L  L+ E +V+P H   R
Sbjct: 390 SKDVELANKMESSGMAGRVHISNATLSFLNGEFEVEPAHGEDR 432


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 281 LDKEVDVQPPHASAR*VSRRIFSAG 207
           LD+ + ++ P    R V+RRI  AG
Sbjct: 121 LDRYIHIKDPLRYGRWVTRRIAVAG 145


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 256 LPMHQPAEFLAGSSQRVAIPI 194
           +P+H+  +F+ GSS+R  + +
Sbjct: 241 VPVHRWYKFIEGSSRRQPVQL 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,962
Number of Sequences: 438
Number of extensions: 1758
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)