Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021937X
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ...    29   1.4  
At5g52660.1 68418.m06537 myb family transcription factor contain...    27   5.5  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    26   9.5  

>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 173

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -1

Query: 413 AGAGHRQRPRHVLAERSDPVTF-ALDAFSSNTRGRLRAPVTVLDELDKEVDVQPP---HA 246
           A +GHR RP+ +  E SD   +  L+ FSS    +L +P + L  LD   +  PP   + 
Sbjct: 94  ANSGHRARPQSLAFEHSDRAAYHHLERFSS----QLISPPSPL-PLDYTQEPPPPGVSNG 148

Query: 245 SAR*VSRRIFSAGRDS 198
           ++   SRR+  +  DS
Sbjct: 149 ASLEYSRRVLGSALDS 164


>At5g52660.1 68418.m06537 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA-binding domain
          Length = 330

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  PRGVGFANNCPSASEGDP 151
           P+G G  NNC S+SE  P
Sbjct: 204 PKGAGANNNCSSSSENTP 221


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
            profile PF05182: Fip1 motif
          Length = 1192

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 407  AGHRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAPV 297
            A H++R   V A +S  ++  L+   +NT GRL  PV
Sbjct: 1058 ASHKEREDAVSA-KSSSISSKLEEKENNTNGRLSEPV 1093


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,580
Number of Sequences: 28952
Number of extensions: 141341
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)