Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021936
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 96 4e-21
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 29 0.70
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 29 0.70
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.2
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 28 1.2
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 5.0
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 26 5.0
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 5.0
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 5.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.6
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 26 6.6
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 6.6
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 8.7
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 25 8.7
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 8.7
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 96.3 bits (229), Expect = 4e-21
Identities = 45/84 (53%), Positives = 57/84 (67%)
Frame = +3
Query: 258 GKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPF 437
G V + L K G KL+H G+K+E IGQIE YD+GN HEF V+ELA PG++ + F
Sbjct: 47 GTVMIRL-KDGRKLDHDGVKIEFIGQIENTYDKGNIHEFTRSVQELASPGEMRHAQMFEF 105
Query: 438 EFANVEKPYEVYTGSNVRLRYFLR 509
EF +V+KPYE Y G NV+LRY R
Sbjct: 106 EFKHVDKPYESYIGKNVKLRYICR 129
Score = 91.9 bits (218), Expect = 9e-20
Identities = 40/71 (56%), Positives = 57/71 (80%)
Frame = +2
Query: 512 TIVRCLTDITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGK 691
T+ R + D+ +E D+ V+ + P+ + I+M+VGI++CLHIEFEY+K+KYHLKDVI+GK
Sbjct: 131 TVSRKMKDVIREKDLWVYRFENEPETNSLIRMDVGIDECLHIEFEYSKNKYHLKDVIIGK 190
Query: 692 IYFLLVRIKNQ 724
IYF+LVRIK Q
Sbjct: 191 IYFILVRIKVQ 201
Score = 32.7 bits (71), Expect = 0.057
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 118 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVPGK*M*R 276
M +F F D+++ D+ ++R + + + G+K+K +Y ETV G M R
Sbjct: 1 MDYF-FKSPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKGTVMIR 52
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.1 bits (62), Expect = 0.70
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = -2
Query: 253 PFHRHNTTITF-----LFYHRPFSLQPPSVCQHHQKLFRYPPSDRTRKSSFSQY 107
PFH N F L Y P L PP + LFR PSDR+ Q+
Sbjct: 259 PFHGSNPNNIFKKIMSLEYELP-KLLPPDIVPLFSHLFRIQPSDRSTTQQIKQF 311
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -1
Query: 206 SVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTKRFFTWF---CFGIVTIKLSKT 36
++++S L++S+ T+S S + +K + + N+S F W FG++ + LS
Sbjct: 532 TIYSSLYSSLNSSNSTVSFSGIFDRVEKSVISELNFSFLFFLLWLLICAFGLIGV-LSSW 590
Query: 35 LK 30
LK
Sbjct: 591 LK 592
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -1
Query: 254 TVSPS*YNNNFSFLPSSVFTSATFRLSASS 165
T + S Y N SFLPSSV +SA+ LS+SS
Sbjct: 216 TTTGSPYYNTSSFLPSSVISSAS--LSSSS 243
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = -1
Query: 254 TVSPS*YNNNFSFLPSSVFTS-ATFRLSASSKTISISA 144
TVS S + +N S +P+SV +S ++F S+SS T +++A
Sbjct: 288 TVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTA 325
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 623 DCLHIEFEYNKSKYHLKDVIVGKIYFLL 706
D +HI +EYN S + L+ I+ + LL
Sbjct: 413 DIVHISYEYNSSAFFLRIAIITTLLILL 440
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -1
Query: 251 VSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTKRFFTWF 72
VSP NN + +V T+ TF S+S+ + +A+ + L + +Y+Y+ F
Sbjct: 156 VSPK--NNPTTVYSGTVATTETF--SSSTVVVIPTAICDGVRGLEYAVYDYTISSSMNEF 211
Query: 71 CF 66
C+
Sbjct: 212 CY 213
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 27 FFQCFTQFYRYYSKTKPRKKSFGRIIIYCENELFRVRSDGGYRNS 161
F Q ++ +YY+ + RK+S R ++ + RSDG Y S
Sbjct: 319 FSQSVARYRQYYNSNRDRKRSSSR----SDDREYHRRSDGRYDRS 359
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 536 CQ*GTERLSPQEIPQPDIRACIY-FVWFFDISKLERIRRVLKQVARTR*FFNQR 378
C+ G+ P E D+ AC F WF + L+ I RVLK + +N R
Sbjct: 84 CRVGSAMAIPLEDESVDLVACGQCFHWFANEEALKEIYRVLKPNGKLALIWNIR 137
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = -2
Query: 601 DRIKDVRITTERVHG-NIH----LLGDVSEAPNDCRRRKYRNLTLE 479
+ KDV ++ E +H NI L+G +S+ +C+R + NL L+
Sbjct: 336 EEAKDVCVSDEDIHNVNIKQITTLIGKMSQVQIECKRLRKENLFLQ 381
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -1
Query: 251 VSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTKRFFTWF 72
VSP NN + +V T+ TF S+S+ + +A+ + L + +Y+Y+ F
Sbjct: 156 VSPK--NNPTTVYSGTVATTETF--SSSTVVVIPTAICDGVRGLEYAVYDYTISSSMNEF 211
Query: 71 CF 66
C+
Sbjct: 212 CY 213
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 254 TVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISIS 147
T S S ++N S +P+S FTS+ F ++ T S S
Sbjct: 664 TSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSAS 699
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 160 LFRYPPSDRTRKSSFSQYIIIRPKDFLRGFVLE 62
LF+Y P RT ++ Q +I+ + G +LE
Sbjct: 108 LFKYVPDKRTLLENYDQLVIVVDETIDDGVILE 140
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 372 FISLVKELARPGDLLQHTSYPFEFANVEKPYEVYTGSNVRLRYFLRRQS 518
F+ +KEL + D + S EF+ + + + + + ++ RY L R+S
Sbjct: 8 FLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKS 56
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 169 DADKRKVAEVKTDDGKKEKLLLYYDGETV 255
+AD E+ + + KK LYYD TV
Sbjct: 157 EADTNNATEMVSSNAKKSVYPLYYDSATV 185
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 534 TSPRRWILPCTRSVVIRTSLILS 602
+ P W+LPC R V+ T L L+
Sbjct: 284 SEPLNWMLPCWRDVMHDTPLTLA 306
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 209 SSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTKRFFTWFC 69
+SVF TF L T+ + V P + L F + +YS FT FC
Sbjct: 100 ASVFY-VTFILFEMPTTLLMKKVQPK-RMLAFIVISYSLTTIFTGFC 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,094
Number of Sequences: 5004
Number of extensions: 73077
Number of successful extensions: 217
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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