Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021936
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971... 105 4e-23
11_06_0454 + 23786984-23786986,23787062-23787136,23787242-237873... 105 4e-23
03_05_0682 - 26691973-26692623,26692681-26692788,26694741-266948... 103 2e-22
09_04_0397 + 17273013-17273570 30 2.2
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 29 3.9
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 29 3.9
07_03_1450 + 26620178-26620456,26622122-26622775 28 6.9
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 28 6.9
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096... 28 9.1
09_04_0475 - 17913982-17914772,17914830-17915156,17915323-179154... 28 9.1
05_07_0192 - 28314224-28316287 28 9.1
>12_02_0439 +
19096711-19096713,19096819-19096893,19097037-19097111,
19097225-19097297,19097536-19097580,19098217-19098328,
19098794-19098866,19099178-19099222,19100216-19100271,
19100370-19100545,19101289-19101476
Length = 306
Score = 105 bits (252), Expect = 4e-23
Identities = 46/85 (54%), Positives = 66/85 (77%)
Frame = +3
Query: 255 SGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYP 434
SG+V+V + PG ++EH G+K+EL+GQIEL+ +RG ++F SLV+EL PG++ + +YP
Sbjct: 49 SGEVSV-VPVPGKRIEHLGVKIELLGQIELYLERGKFYDFTSLVRELDIPGEIYEKKTYP 107
Query: 435 FEFANVEKPYEVYTGSNVRLRYFLR 509
FEF+ VE PYE Y G+NVRLRY L+
Sbjct: 108 FEFSTVEMPYESYNGTNVRLRYILK 132
Score = 92.3 bits (219), Expect = 4e-19
Identities = 42/56 (75%), Positives = 46/56 (82%)
Frame = +2
Query: 551 DIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIK 718
+ V P + NSIKMEVGIEDCLHIEFEY+KSKYHLKDVI+GKIYFLLVRIK
Sbjct: 150 EFCVRNYSPAPTINNSIKMEVGIEDCLHIEFEYSKSKYHLKDVIIGKIYFLLVRIK 205
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 133 FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVPGK 264
F DI I F DA RK VK D+G+ + ++ ET+ G+
Sbjct: 8 FKPPCDISIAFSDARSRKQIAVKNDNGRTVMVPVFQSLETISGE 51
>11_06_0454 +
23786984-23786986,23787062-23787136,23787242-23787316,
23787534-23787606,23787965-23788009,23788398-23788509,
23788640-23788706,23789010-23789054,23790138-23790193,
23790280-23790455,23790584-23790710,23791384-23791426
Length = 298
Score = 105 bits (252), Expect = 4e-23
Identities = 45/85 (52%), Positives = 67/85 (78%)
Frame = +3
Query: 255 SGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYP 434
+G+V+V PG ++EHQG+K+EL+GQIEL+++RG+ ++F SLV+EL G++ + +YP
Sbjct: 49 AGEVSVA-PVPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLVRELEVAGEIYERKTYP 107
Query: 435 FEFANVEKPYEVYTGSNVRLRYFLR 509
FEF+ VE PYE Y G+NVRLRY L+
Sbjct: 108 FEFSTVEMPYESYNGTNVRLRYILK 132
Score = 95.9 bits (228), Expect = 3e-20
Identities = 45/63 (71%), Positives = 49/63 (77%)
Frame = +2
Query: 530 TDITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLV 709
T + + D V P + NSIKMEVGIEDCLHIEFEY+KSKYHLKDVIVGKIYFLLV
Sbjct: 141 TSVVECRDFCVRNYTPLPSINNSIKMEVGIEDCLHIEFEYSKSKYHLKDVIVGKIYFLLV 200
Query: 710 RIK 718
RIK
Sbjct: 201 RIK 203
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 133 FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVPGK 264
F D+ I F D RK +K D+GK + + ET+ G+
Sbjct: 8 FKAPCDVFITFADERSRKQVAIKKDNGKTLMVPAFQSLETIAGE 51
>03_05_0682 -
26691973-26692623,26692681-26692788,26694741-26694807,
26695311-26695422,26695743-26695787,26696163-26696235,
26696321-26696362
Length = 365
Score = 103 bits (246), Expect = 2e-22
Identities = 41/75 (54%), Positives = 61/75 (81%)
Frame = +3
Query: 285 PGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPY 464
PG ++EHQG+K+EL+GQIEL+++RG+ ++F SLV+EL G++ + +YPFEF+ VE PY
Sbjct: 21 PGKRVEHQGVKIELLGQIELYHERGHFYDFTSLVRELDVAGEIYERKTYPFEFSTVEMPY 80
Query: 465 EVYTGSNVRLRYFLR 509
+ Y G+NVRLRY L+
Sbjct: 81 DSYNGTNVRLRYILK 95
>09_04_0397 + 17273013-17273570
Length = 185
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -2
Query: 616 AYFHFDRIKDVRITTERVHGNIHLLGDVSEAPNDCR 509
A+F FD+ D RI+ E V +H LGD S + DCR
Sbjct: 121 AFFVFDQDGDGRISAEEVMQVLHKLGD-SCSLEDCR 155
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 67 KQNHVKNLLVE*LYIVKMSFFG----FGQTADIEIVFDDADKRKVAE 195
KQ+H LL LYIV F G FG+ ++EI D + A+
Sbjct: 237 KQHHAAELLPTPLYIVYTQFLGQKEAFGENIEVEITGSTKDAQMFAQ 283
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 518 VRCLTDITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIE 640
+R L ++ E +IA H SYPD I+ E + + L+++
Sbjct: 53 LRGLNEVISEEEIAAHLSQSYPDADQEIEFESFLREYLNLQ 93
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 256 EPFHRHNTTITFLFYHRPFSLQPPSVCQHHQKLFRYPPS 140
+P+H H+ + PFSL PP HH L + P+
Sbjct: 137 QPYHHHH-------HLNPFSLPPPPPAYHHHHLIQEEPA 168
>01_06_0909 -
32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/87 (22%), Positives = 39/87 (44%)
Frame = +1
Query: 295 NLNIKASRSNS*VRLNYSTTEVIITNSYLWLKN*RVRATCFNTRRILSSLLMSKNHTKYI 474
N ++K + + R++ S + +I N Y +++ RR+L +L+ ++T+
Sbjct: 739 NSHLKLNGLSDLFRVSQSLADGVIPNEYGINAKQKLKIGSKIARRLLGKILIDLHNTRRE 798
Query: 475 QALMSGCGISCGDNRSVPH*HHQGGGY 555
A G +C D VP + GY
Sbjct: 799 VAAAGGESNACHDPTIVPSSKRKDRGY 825
>10_08_0858 -
21108283-21108387,21108820-21108889,21109490-21109646,
21109930-21110062,21110409-21110583,21113353-21113453,
21113620-21113706,21115871-21115931,21116114-21116178,
21116534-21117631
Length = 683
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 261 KVNVTLRKPGSKLEHQGIKVELIGQ 335
+V ++LRKP K +H G V+LI +
Sbjct: 609 QVQISLRKPNRKCKHSGQTVKLINE 633
>09_04_0475 -
17913982-17914772,17914830-17915156,17915323-17915493,
17915583-17915824,17915862-17916049,17916184-17916253,
17916329-17916612
Length = 690
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 357 GNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYTGSNVRL--RYFLRRQSFGAS 530
GNH + ISLV L + + +Y +A+ + SN+ L + + FGAS
Sbjct: 454 GNHGQHISLVTRLRIAHESAEALAYLHSYASPPIIHGDVKSSNILLDVNFMAKVSDFGAS 513
Query: 531 LTSP 542
+ +P
Sbjct: 514 ILAP 517
>05_07_0192 - 28314224-28316287
Length = 687
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +3
Query: 345 FYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYTGSNVRLRYFLRR 512
F DRG S+V+ + R H SY + EV GS V + RR
Sbjct: 189 FLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRR 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,119,738
Number of Sequences: 37544
Number of extensions: 446741
Number of successful extensions: 1040
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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