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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021936
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13044| Best HMM Match : Vps26 (HMM E-Value=0)                      148   4e-36
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            33   0.19 
SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.99 
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.2  

>SB_13044| Best HMM Match : Vps26 (HMM E-Value=0)
          Length = 669

 Score =  148 bits (359), Expect = 4e-36
 Identities = 65/85 (76%), Positives = 73/85 (85%)
 Frame = +3

Query: 255 SGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYP 434
           +GKV++ L+ PG KLEHQGIK+E IGQIELFYDRGNHHEF SLV+ELARPG+L Q   Y 
Sbjct: 46  TGKVHINLKNPGKKLEHQGIKIEFIGQIELFYDRGNHHEFTSLVRELARPGELTQSVCYD 105

Query: 435 FEFANVEKPYEVYTGSNVRLRYFLR 509
           FEF NVEKPYE YTG+NVRLRYFLR
Sbjct: 106 FEFVNVEKPYETYTGANVRLRYFLR 130



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = +1

Query: 121 SFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVPGK 264
           SFFGFGQTA++EI    ADKRK  +VK +DGKKE+L L+YDGE+V GK
Sbjct: 1   SFFGFGQTAELEIALTGADKRKQVDVKNEDGKKERLFLFYDGESVTGK 48



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 39/73 (53%), Positives = 46/73 (63%)
 Frame = +2

Query: 500 FPAATIVRCLTDITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDV 679
           F   TIVR L+D+TKE+D+AVHTL SYPD+                      ++YHLKDV
Sbjct: 128 FLRVTIVRRLSDVTKEMDLAVHTLSSYPDM---------------------NTRYHLKDV 166

Query: 680 IVGKIYFLLVRIK 718
           IVGKIYFLLVRIK
Sbjct: 167 IVGKIYFLLVRIK 179


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 468 VYTGSNVRLRYFLRRQSFGASLTSPRRWILPCTRSVVIRTSL 593
           V+  S+VR+RY ++R  F  S  S R W +   +S+ IR ++
Sbjct: 569 VFAASSVRIRYAVKRSEFAYSAMSFRIWFVFSLQSICIRCAM 610


>SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 274 VTFTFPEPFHRHNTTITFLFYHRPFSLQPPSVCQHHQKL 158
           +T T+PE   RH  + T LF  +P + QPP     HQ+L
Sbjct: 96  LTKTYPEL--RHGLSSTILFPLKPMTAQPPQPILAHQRL 132


>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1257

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 351 DRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVY 473
           + GNH   I + K+  +    L H + P ++A++ +P+ V+
Sbjct: 630 ESGNHEVAIEIHKKPIKHSPFLVHVASPRDYASIARPFLVF 670


>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 283 FRNVTFTFPEPFHRHNTTITFLFYHRPFSLQPPSVCQHH 167
           + + T T P  +H +  TI   ++H   ++  PS C H+
Sbjct: 393 YNHNTITIPSQYHHNTNTIPSQYHHNTITI--PSQCHHN 429


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 536 ITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRI 715
           I  E  +A HT   + +  N I      E  + I +E NK+  H K V+   +   L+R+
Sbjct: 476 ILNETKLA-HTPAHFDEDFNEIIKREEEESGVQISYEENKAAQHAKSVL--HLEIPLIRL 532

Query: 716 KN 721
           KN
Sbjct: 533 KN 534


>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1046

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 470 IYRL*CQVAVFPAATIVRCLTDITKEVDIAVHTLCSYPDVL 592
           I+ L C + + P+ T+  CL  +   VD+A + LCS  DV+
Sbjct: 459 IHELQCLLQICPSPTLDICLIGMHPFVDLA-YLLCSREDVV 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,975,696
Number of Sequences: 59808
Number of extensions: 530466
Number of successful extensions: 1407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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