Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021936
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-4|CAA92489.2|  408|Caenorhabditis elegans Hypothetical pr...   128   4e-30
Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>Z68220-4|CAA92489.2|  408|Caenorhabditis elegans Hypothetical
           protein T20D3.7 protein.
          Length = 408

 Score =  128 bits (309), Expect = 4e-30
 Identities = 55/85 (64%), Positives = 69/85 (81%)
 Frame = +3

Query: 255 SGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYP 434
           +G V+V L+K   K EHQGI++E IGQIE++YDRGN  +FISL +ELARPGDL Q+  +P
Sbjct: 100 TGTVHVNLKKANHKFEHQGIRIEFIGQIEVYYDRGNQQDFISLTRELARPGDLTQNAQFP 159

Query: 435 FEFANVEKPYEVYTGSNVRLRYFLR 509
           FEF NVEKP+E Y G+NV+LRYFLR
Sbjct: 160 FEFNNVEKPFETYMGTNVKLRYFLR 184



 Score =  122 bits (293), Expect = 4e-28
 Identities = 56/73 (76%), Positives = 63/73 (86%)
 Frame = +2

Query: 500 FPAATIVRCLTDITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDV 679
           F   T++R LTD+TKE+D+ VH L SYPD   SIKMEVGIEDCLHIEFEYNK+KYHL+DV
Sbjct: 182 FLRVTVIRRLTDLTKELDLVVHALSSYPDNDKSIKMEVGIEDCLHIEFEYNKNKYHLQDV 241

Query: 680 IVGKIYFLLVRIK 718
           IVGKIYFLLVRIK
Sbjct: 242 IVGKIYFLLVRIK 254



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +1

Query: 127 FGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVPG 261
           FGFGQ+A+I+I   + D RK+ + + DDG      LYYDGE+V G
Sbjct: 57  FGFGQSAEIQIRLSNEDTRKIVKARGDDGNMHDHFLYYDGESVTG 101


>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 596 SIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIY 697
           ++K +V +  CLH  F + KS YH+ +  +  +Y
Sbjct: 314 TLKHDVFMSQCLHALFNFIKSSYHIDNEWIQYVY 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,666
Number of Sequences: 27780
Number of extensions: 418420
Number of successful extensions: 1055
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)