Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021936
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   4.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   4.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   4.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   4.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   4.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   4.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   4.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   4.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 KRFRESECDVAETGIKT*TSRHQGR 322
           +RFR+S  + +ETG+++ T   + R
Sbjct: 13  ERFRQSRSEDSETGLRSRTQEERLR 37


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 KRFRESECDVAETGIKT*TSRHQGR 322
           +RFR+S  + +ETG+++ T   + R
Sbjct: 13  ERFRQSRSEDSETGLRSRTQEERLR 37


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 KRFRESECDVAETGIKT*TSRHQGR 322
           +RFR+S  + +ETG+++ T   + R
Sbjct: 13  ERFRQSRSEDSETGLRSRTQEERLR 37


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 KRFRESECDVAETGIKT*TSRHQGR 322
           +RFR+S  + +ETG+++ T   + R
Sbjct: 13  ERFRQSRSEDSETGLRSRTQEERLR 37


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 KRFRESECDVAETGIKT*TSRHQGR 322
           +RFR+S  + +ETG+++ T   + R
Sbjct: 13  ERFRQSRSEDSETGLRSRTQEERLR 37


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 KRFRESECDVAETGIKT*TSRHQGR 322
           +RFR+S  + +ETG+++ T   + R
Sbjct: 13  ERFRQSRSEDSETGLRSRTQEERLR 37


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 KRFRESECDVAETGIKT*TSRHQGR 322
           +RFR+S  + +ETG+++ T   + R
Sbjct: 13  ERFRQSRSEDSETGLRSRTQEERLR 37


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 KRFRESECDVAETGIKT*TSRHQGR 322
           +RFR+S  + +ETG+++ T   + R
Sbjct: 13  ERFRQSRSEDSETGLRSRTQEERLR 37


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 455 FDISKLERIRRVLKQVARTR*FFNQRYEFVMIT 357
           FDI  LER R  + +   T    N R E + +T
Sbjct: 305 FDIQDLERWRDRIYEAIHTGSVINTRGERIQLT 337


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 YCCIMTVKRFRESECDV 277
           +   + VK FRES C V
Sbjct: 5   FVAFLPVKSFRESRCSV 21


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 650 NKSKYHLKDVIVGKIYFLL 706
           + S+YH+   I G++Y+ L
Sbjct: 246 SSSQYHMPKEIRGQLYYFL 264


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 650 NKSKYHLKDVIVGKIYFLL 706
           + S+YH+   I G++Y+ L
Sbjct: 246 SSSQYHMPKEIRGQLYYFL 264


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 463 YGFSTLANSKGYD 425
           +GFS L N K YD
Sbjct: 27  FGFSYLLNCKNYD 39


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 KEVDIAVHTLCSYPDVLNSIKM 607
           KE+D++ + L S PD L  + +
Sbjct: 434 KELDLSGNELTSVPDALRDLAL 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,489
Number of Sequences: 438
Number of extensions: 5821
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)