Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021936
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53530.1 68418.m06652 vacuolar protein sorting-associated pro...   109   2e-24
At4g27690.1 68417.m03981 vacuolar protein sorting-associated pro...   107   1e-23
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    29   4.3  
At1g28240.1 68414.m03466 expressed protein                             29   4.3  
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR...    28   5.7  
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si...    28   7.6  
At2g48110.1 68415.m06022 expressed protein                             28   7.6  
At4g22180.1 68417.m03206 F-box family protein contains F-box dom...    27   10.0 
At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase fa...    27   10.0 

>At5g53530.1 68418.m06652 vacuolar protein sorting-associated
           protein 26, putative / VPS26, putative similar to
           vacuolar sorting protein 26 [Homo sapiens] GI:9622852;
           contains Pfam profile PF03643: Vacuolar protein
           sorting-associated protein 26
          Length = 302

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/85 (54%), Positives = 67/85 (78%)
 Frame = +3

Query: 255 SGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYP 434
           +GK+N+   + G K+EH G+KVEL+GQIE+++DRGN ++F SLV+E+  PG++ +  +YP
Sbjct: 49  AGKINIEPYQ-GKKVEHNGVKVELLGQIEMYFDRGNFYDFTSLVREIDVPGEIYERKTYP 107

Query: 435 FEFANVEKPYEVYTGSNVRLRYFLR 509
           FEF++VE PYE Y G NVRLRY L+
Sbjct: 108 FEFSSVEMPYETYNGVNVRLRYVLK 132



 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 45/61 (73%), Positives = 48/61 (78%)
 Frame = +2

Query: 536 ITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRI 715
           I +  D  V      P + NSIKMEVGIEDCLHIEFEYNKSKYHLKDVI+GKIYFLLVRI
Sbjct: 143 IVEYQDFVVRNYVPLPPINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVILGKIYFLLVRI 202

Query: 716 K 718
           K
Sbjct: 203 K 203



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 133 FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVPGK 264
           F    +I I F D   RK    K D+G+     L+   ET+ GK
Sbjct: 8   FKPACNISITFTDGKNRKQVPTKKDNGQIVMNPLFQSQETIAGK 51


>At4g27690.1 68417.m03981 vacuolar protein sorting-associated
           protein 26, putative / VPS26, putative similar to
           vacuolar sorting protein 26 [Homo sapiens] GI:9622852;
           contains Pfam profile PF03643: Vacuolar protein
           sorting-associated protein 26
          Length = 303

 Score =  107 bits (256), Expect = 1e-23
 Identities = 48/85 (56%), Positives = 64/85 (75%)
 Frame = +3

Query: 255 SGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYP 434
           SGKV +   + G K+EH G+KVEL+GQIE+++DRGN ++F SLV+EL  PG++ +  +YP
Sbjct: 49  SGKVCIEPYQ-GKKVEHNGVKVELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYP 107

Query: 435 FEFANVEKPYEVYTGSNVRLRYFLR 509
           FEF  VE PYE Y G NVRLRY L+
Sbjct: 108 FEFPTVEMPYETYNGVNVRLRYVLK 132



 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 44/56 (78%), Positives = 48/56 (85%)
 Frame = +2

Query: 551 DIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIK 718
           ++ V      PD+ NSIKMEVGIEDCLHIEFEYNKSKYHLKDVI+GKIYFLLVRIK
Sbjct: 148 ELVVRNYAPLPDINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVILGKIYFLLVRIK 203


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 547 LLGDVSEAPNDCRRRKYRNLTLEPVYTSYGFSTLANSKGYDV 422
           LLGDV  A +DC R     L L     S+G S    S+ YD+
Sbjct: 475 LLGDVDAAISDCTRA----LCLSEPVNSHGKSLWTRSRAYDI 512


>At1g28240.1 68414.m03466 expressed protein
          Length = 581

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 316 LMP*CSSFDPGFRNVTFTFPEPFHR 242
           LMP   SF P  +N+T+ + EP +R
Sbjct: 181 LMPNAPSFSPVLKNLTYIYEEPLNR 205


>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1193

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 527 LTDITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIE 640
           L++I  + DI +H L + P+ L   K+ V ++D  H+E
Sbjct: 286 LSEILNQKDIVIHNLNAAPNWLKDRKVLVILDDVDHLE 323


>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase, Zea mays,
           PIR2:JQ1329; contains non-consensus (GC) donor splice
           site at intron 4
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 291 IPVSATSHSLSRNRFTVIIQQ 229
           +P+  T HSL RN+F  ++QQ
Sbjct: 353 VPMVLTGHSLGRNKFEQLLQQ 373


>At2g48110.1 68415.m06022 expressed protein
          Length = 1295

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 328 MSSTLMP*CSSFDPGFRNVTFTFP 257
           ++  LMP C +F  G  N+T+T P
Sbjct: 635 LAGALMPICEAFGSGVPNITWTLP 658


>At4g22180.1 68417.m03206 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 590 LNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKN 721
           L  +K+E  I D  H    YN  +YH +  I+  ++++  + K+
Sbjct: 141 LGMVKIERTIYDWFHSTLHYNGKEYHKRIRILSTVFWIDEKTKD 184


>At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 594

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 217 FYHRPFSLQPPSVCQHHQKLFRYPPSDRTRKSSF 116
           F HRP    P   C H    +   PSD +R S +
Sbjct: 235 FSHRPSDFDPSFRCGHRPSDYSRRPSDYSRPSDY 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,618,286
Number of Sequences: 28952
Number of extensions: 373751
Number of successful extensions: 865
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)