Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021935
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 125 8e-30
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 114 1e-26
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 28 1.2
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 28 1.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 3.7
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.6
>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 289
Score = 125 bits (301), Expect = 8e-30
Identities = 55/84 (65%), Positives = 63/84 (75%)
Frame = +2
Query: 257 RWTNAKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDT 436
RWT AK+EI+ LNPIKQD KKG LRFV N FPH GYIWNYGA PQT+E+PN V P+T
Sbjct: 53 RWTQAKLEITKEATLNPIKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVVHPET 112
Query: 437 GARGDNDPVDVIEIGERVASRGDV 508
A+GD+DP+DV EIGE G V
Sbjct: 113 KAKGDSDPLDVCEIGEARGYTGQV 136
Score = 121 bits (292), Expect = 9e-29
Identities = 52/75 (69%), Positives = 61/75 (81%)
Frame = +1
Query: 514 VKILGTLALIDEGETDWKLIAIDSRDPNAEKLNDVQDVETLFPGLLRATVEWFRLYKVPD 693
VK+LG +AL+DEGETDWK+I ID DP A KLND++DVE PGL+RAT EWFR+YK+PD
Sbjct: 139 VKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVERHMPGLIRATNEWFRIYKIPD 198
Query: 694 GKPVNKFAFDGELKN 738
GKP N FAF GE KN
Sbjct: 199 GKPENSFAFSGECKN 213
Score = 49.6 bits (113), Expect = 5e-07
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +3
Query: 111 YIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEV 254
Y E G+ T DY+V+ + G PIS HDIPL+A+ + ++NMVVE+
Sbjct: 4 YTTREVGALNTLDYQVYVEKNGTPISSWHDIPLYANAEKTILNMVVEI 51
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 114 bits (275), Expect = 1e-26
Identities = 49/84 (58%), Positives = 60/84 (71%)
Frame = +2
Query: 257 RWTNAKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDT 436
RWT AK EISL +PIKQD+K G LR+V N FP+ G+IWNYGALPQTWE+PN +D T
Sbjct: 58 RWTQAKCEISLTSPFHPIKQDLKNGKLRYVANSFPYHGFIWNYGALPQTWEDPNVIDSRT 117
Query: 437 GARGDNDPVDVIEIGERVASRGDV 508
+GD DP+DV EIG + G +
Sbjct: 118 KMKGDGDPLDVCEIGGSIGYIGQI 141
Score = 106 bits (254), Expect = 4e-24
Identities = 44/71 (61%), Positives = 55/71 (77%)
Frame = +1
Query: 514 VKILGTLALIDEGETDWKLIAIDSRDPNAEKLNDVQDVETLFPGLLRATVEWFRLYKVPD 693
VK+LG L LID+GETDWK++AID DP A+ LND+ DV+ L P LL T +WF +YK+PD
Sbjct: 144 VKVLGALGLIDQGETDWKILAIDINDPRAKLLNDISDVQNLMPRLLPCTRDWFAIYKIPD 203
Query: 694 GKPVNKFAFDG 726
GKP N+F FDG
Sbjct: 204 GKPKNRFFFDG 214
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +3
Query: 84 ATLKTQVRMYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEV 254
A+L + + + G TPD+RV+ PIS HD+PL +DK NMV E+
Sbjct: 2 ASLAKNILQFRSKITGKLNTPDFRVYCYKNNKPISFFHDVPLTSDK--DTFNMVTEI 56
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 685 VPDGKPVNKFAFDGELKN 738
+PDGKP+NK A+ E +N
Sbjct: 505 IPDGKPLNKIAWQPEKRN 522
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 6 PVCRSIARRLCAVKEPTRVTCSINSTATLKTQVRMYIVEERGSPYTPD 149
P +A R C + R C I +T K+ +YI E P T +
Sbjct: 59 PEWAELADRACETMKTLRHPCIIKYLSTYKSSTHLYIATETVRPVTTE 106
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 3.7
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -3
Query: 654 AEEAREQRLHVLYIVQLLRVRVPGIDRYQLPIGLAFVDES*RTEDLYGVTSPRLATRSPI 475
A EA QR+ LLR V DR + +G S + + L G++ P L T I
Sbjct: 863 AMEAVLQRIRYHLFRTLLRQDVEFFDRSENTVGAITTSLSTKIQSLEGLSGPTLGTFFQI 922
Query: 474 SMTSTGSLSPLAPVSG 427
+T+ S++ L+ +G
Sbjct: 923 -LTNIISVTILSLATG 937
>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 354 TLFTNRRLPFFTSCLIGLRASPR-LISIFALVHLVLL 247
T FT R + FF ++G ASP +F+L+ + L
Sbjct: 67 TNFTLRGIDFFVDTIVGFPASPETTFKVFSLLDSLCL 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,361
Number of Sequences: 5004
Number of extensions: 60402
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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