Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021935
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   1e-29
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)                      30   1.7  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          30   1.7  
SB_37299| Best HMM Match : Transposase_34 (HMM E-Value=7.1)            30   2.3  
SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15)         29   5.3  
SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_54503| Best HMM Match : DUF753 (HMM E-Value=4.7)                    28   7.0  
SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)                     28   7.0  
SB_51730| Best HMM Match : Methyltransf_6 (HMM E-Value=8.8)            28   7.0  
SB_31408| Best HMM Match : ENTH (HMM E-Value=0)                        28   7.0  
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)                    28   7.0  
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)                   28   7.0  
SB_9208| Best HMM Match : p450 (HMM E-Value=0)                         28   9.2  

>SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score =  127 bits (306), Expect = 1e-29
 Identities = 54/80 (67%), Positives = 63/80 (78%)
 Frame = +2

Query: 269 AKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARG 448
           A  EI   EALNPIKQDVKKG +RFVN+ FP+ GYIWNYGALPQTWE+P H D  TG +G
Sbjct: 275 ANSEICTKEALNPIKQDVKKGKVRFVNHCFPYHGYIWNYGALPQTWEDPGHTDAATGCKG 334

Query: 449 DNDPVDVIEIGERVASRGDV 508
           DNDP+D  EIG  V++RG+V
Sbjct: 335 DNDPIDACEIGTMVSTRGEV 354



 Score =  116 bits (280), Expect = 2e-26
 Identities = 50/75 (66%), Positives = 60/75 (80%)
 Frame = +1

Query: 514 VKILGTLALIDEGETDWKLIAIDSRDPNAEKLNDVQDVETLFPGLLRATVEWFRLYKVPD 693
           VK+LG LA+IDEGETDWK+I ID  DP A  LND+ DVE   PGL++ATV+WFR+YK+P 
Sbjct: 357 VKVLGILAMIDEGETDWKVICIDVNDPVANNLNDIDDVEKHMPGLIKATVDWFRIYKIPA 416

Query: 694 GKPVNKFAFDGELKN 738
           GKP NKFAF+ E KN
Sbjct: 417 GKPENKFAFNAEAKN 431



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 YIVEERGSPYTPDYRVFFKD-EGGPISPMHDIPLWAD 218
           Y   E GSPY+ DYR++FK+ +G  +SP HDIPL+A+
Sbjct: 240 YTTRESGSPYSTDYRIYFKNSDGQAVSPFHDIPLFAN 276


>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
          Length = 2527

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 591 PERGEVERCTRRGDVVPWPPPRHRR 665
           P+  ++E     G+++P PPPRH+R
Sbjct: 500 PKDVKLEELNEDGEILPTPPPRHKR 524


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 739 RSLVRRQTRTCSPACRPELCRV*TIRRW 656
           RSL+RRQ R   PA RP   R+   +RW
Sbjct: 560 RSLIRRQKRALFPALRPREFRLGPRKRW 587


>SB_37299| Best HMM Match : Transposase_34 (HMM E-Value=7.1)
          Length = 177

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 260 WTNAKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWE-NPNHVDPDT 436
           W + K E   G A   ++  V++  + F+N   P    IW +G +  T E  PN  D D 
Sbjct: 80  WDSGKYE--RGAAAKTLEAKVREVLICFINRAIPRSTRIWLFGRVIVTHEGKPNCTDRDR 137

Query: 437 GAR 445
             R
Sbjct: 138 TER 140


>SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15)
          Length = 296

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 625 VETLFPGLLRATVEWFRLYKVPDGKP 702
           ++T  P +L  T+ WF  +  PD  P
Sbjct: 169 IQTYIPSMLTVTISWFSFWISPDSPP 194


>SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 271 ENGDQPRGGPQSYQAGRKERQPSVREQRLPSSRL 372
           +NGD  R   +  Q GR  R  S R + L SSRL
Sbjct: 180 QNGDDGRPHREERQVGRDHRHESDRRRDLTSSRL 213


>SB_54503| Best HMM Match : DUF753 (HMM E-Value=4.7)
          Length = 141

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +3

Query: 15  RSIARRLCAVKEPTRVTCSINSTATLKTQVRMYI----VEERGSPYTPDYRVFFKDEGGP 182
           R +A+  CA +  + VT   + +   KT     +    V+ RGSP+ PD R +       
Sbjct: 40  RQLAKGGCAARRLSWVTPGFSQSRRCKTTASAKLACLQVDSRGSPFPPDDRPYRFTSNFS 99

Query: 183 ISPMHDI 203
           +S   D+
Sbjct: 100 VSRARDV 106


>SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)
          Length = 432

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 655 RGGGQGTTSPRLVHRSTSPRSGP 587
           +GG   TT+PR  H +T+PR  P
Sbjct: 207 QGGTHATTTPRGTHATTTPRGVP 229


>SB_51730| Best HMM Match : Methyltransf_6 (HMM E-Value=8.8)
          Length = 409

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 48  EPTRVTCSINSTATLKTQVRMYIVEERGSPYTPDYRVFFKDEGGPISPM 194
           +PTR     N  A L + +R Y+V+  G P   +      D  G I+P+
Sbjct: 113 QPTRALFD-NVAANLISSMRFYVVDSIGRPINLNGHRIVADNSGEIAPL 160


>SB_31408| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 1080

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 531 RTEDLYGVTSPR-LATRSPISMTSTGSLSPLAPVSGST 421
           RT DL      R +AT +P ++  T S + +AP SG+T
Sbjct: 652 RTLDLGAAAHYRGVATETPATVNGTSSATSIAPTSGAT 689


>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
          Length = 514

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 670 TIRRWRGGGQGTTSPRLVHRSTSPRSGP 587
           T + + GG   TT+PR  H +T+PR  P
Sbjct: 263 TQQLYPGGTHATTTPRGTHATTTPRGVP 290


>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
          Length = 1223

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 48  EPTRVTCSINSTATLKTQVRMYIVEERGSPYTPDYRVFFKDEGGPISPM 194
           +PTR     N  A L + +R Y+V+  G P   +      D  G I+P+
Sbjct: 712 QPTRALFD-NVAANLISSMRFYVVDSIGRPINLNGHRIVADNSGEIAPL 759


>SB_9208| Best HMM Match : p450 (HMM E-Value=0)
          Length = 544

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 374 IWNYGALPQTWENPNHVDP 430
           +WN    PQ W NP+  DP
Sbjct: 443 VWNMHHDPQRWSNPDEFDP 461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,591,290
Number of Sequences: 59808
Number of extensions: 508899
Number of successful extensions: 1556
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)