Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021935
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.32 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = +2

Query: 293 EAL-NPIKQDVKKGNLRFVNNVFPHR-----GY-IWNYGALPQT-WENPN 418
           EAL N IK    KGN+R    +FP R      Y +WN+  +    ++NP+
Sbjct: 151 EALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLISYAGYKNPD 200


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 351 LFTNRRLPFFTSCLIGLRASPRLISIFALVHLVLLLPC*RGVELCRPIVECRAW 190
           + T RRL   T+C +   A+  L+   A++   +LL    G     P++ C +W
Sbjct: 62  VITTRRLRSVTNCFVSSLAAADLLVGLAVMPPAVLLQLTGGTWELGPML-CDSW 114


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 386 GALPQTWENPNHVDPDTGARGDNDPVDVIEIGERVASRGDVT 511
           GA+    E    VD D    GD+D  D +E      + G +T
Sbjct: 377 GAMNANGEAVGEVDEDDDDDGDDDDDDDVEAANGKPAEGMLT 418


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 171 EGGPISPMHDIPLWADKAQRLVNMVVEVLDGPM 269
           +G PISP++D    A     LV + +  L G +
Sbjct: 423 QGNPISPLNDWYSLASSWPALVPLALGFLAGEL 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,382
Number of Sequences: 438
Number of extensions: 4199
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)