Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021934
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    92   8e-20
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    48   9e-07
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    48   9e-07
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   3.3  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   4.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 40/42 (95%), Positives = 42/42 (100%)
 Frame = -3

Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
           F+AMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ
Sbjct: 385 FSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = -3

Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559
           F  M+ ++AF+HWY GEGM+E EF+EA   +  L  +Y++
Sbjct: 399 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = -3

Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559
           F  M+ ++AF+HWY GEGM+E EF+EA   +  L  +Y++
Sbjct: 395 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 408 FCFSYLYSXFNSFRLQHA**NNLGSTR 328
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 225 ASLRVAVYCNNIPELPFVVKEKHRECKHNLLPRQNEYFLGYFIMHV 362
           ++++V +  +NI  L  V K K +  K+N LP ++ YF+     ++
Sbjct: 326 SNMKVLLVIDNISILSVVTKYKDK--KNNFLPPKDFYFINLLFKYI 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,326
Number of Sequences: 5004
Number of extensions: 41217
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)