Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021934
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 93 1e-19
03_01_0034 + 318432-318825,318902-319851 93 1e-19
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 93 1e-19
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 93 1e-19
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 92 3e-19
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 92 3e-19
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 92 3e-19
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 90 2e-18
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 49 4e-06
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 49 4e-06
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 49 4e-06
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 49 4e-06
02_05_1127 + 34292894-34293284,34293948-34295443 32 0.37
03_06_0618 - 35132077-35132830,35133690-35135212 29 3.4
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 6.0
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 28 7.9
01_06_0657 - 30940020-30940034,30940226-30940861 28 7.9
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ
Sbjct: 565 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 606
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ
Sbjct: 406 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 447
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/42 (95%), Positives = 42/42 (100%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV+EYQQYQ
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/42 (95%), Positives = 42/42 (100%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV+EYQQYQ
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/42 (95%), Positives = 42/42 (100%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV+EYQQYQ
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553
FTAMFRRKAFLHWYT EGMDEMEFTEAES+MNDLV+EYQQYQ
Sbjct: 401 FTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQ 442
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559
F M+ ++AF+HWY GEGM+E EF+EA + L +Y++
Sbjct: 395 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559
F M+ ++AF+HWY GEGM+E EF+EA + L +Y++
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559
F M+ ++AF+HWY GEGM+E EF+EA + L +Y++
Sbjct: 395 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = -3
Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559
F M+ ++AF+HWY GEGM+E EF+EA + L +Y++
Sbjct: 476 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 515
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 519 RQTLRPRRRWPPGTVGTRRQGRSCG 593
R T +P+RRWPPG+ G +G S G
Sbjct: 83 RATGQPKRRWPPGSSGGGARGGSSG 107
>03_06_0618 - 35132077-35132830,35133690-35135212
Length = 758
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 186 SVTAPRACSAEGLASLRVAVYCNNIPELPFVVKEKHRECKHNLLPR 323
S+ A ACS +GL + Y N IP+ F + K + C +LL R
Sbjct: 490 SLAALIACSHQGLGDEGLRYYENTIPDDGFSLDVKLKACMVDLLGR 535
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 593 LSASVNSISSMPSPVYQCKKALRLNIAVN 679
L+AS N+IS +P + C K RLN+ N
Sbjct: 142 LNASNNTISVLPDELAGCSKLFRLNLEGN 170
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 510 PAPRQTLRPRRRWPPGTVGTRRQGRSCGS 596
PA RQ L R+ PG G RRQGR C S
Sbjct: 20 PAWRQELA--RQESPGVAGGRRQGRWCRS 46
>01_06_0657 - 30940020-30940034,30940226-30940861
Length = 216
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 513 APRQTLRPRRRWPPGTVGTRRQGRSCG 593
A R + P RR PG+ G RR GRS G
Sbjct: 84 ATRSDIAPSRRPVPGSRGGRRGGRSRG 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,867
Number of Sequences: 37544
Number of extensions: 267125
Number of successful extensions: 732
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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