BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021934 (680 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 23 3.6 AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 6.2 AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 8.2 >AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter transporter-1A protein. Length = 203 Score = 22.6 bits (46), Expect = 3.6 Identities = 9/36 (25%), Positives = 17/36 (47%) Frame = -3 Query: 138 FDIXDVILVLRFVTSVMSCWLFLMKANLYRTTFFFF 31 F I + + + +VMSCW+ + + F+F Sbjct: 53 FKIAPLFKGIGYAAAVMSCWMNVYYIVILAWAIFYF 88 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 21.8 bits (44), Expect = 6.2 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = +2 Query: 596 SASVNSISSMPSPVYQCKKALR-LNIAVN 679 +AS NS+ S+P ++ + LR +++A N Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295 >AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein kinase foraging protein. Length = 678 Score = 21.4 bits (43), Expect = 8.2 Identities = 10/29 (34%), Positives = 14/29 (48%) Frame = +3 Query: 501 ISCPAPRQTLRPRRRWPPGTVGTRRQGRS 587 + C + + PRR PG+ G R RS Sbjct: 43 LQCASLKLAFEPRRNPGPGSKGPRDFPRS 71 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 164,703 Number of Sequences: 438 Number of extensions: 3301 Number of successful extensions: 8 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 20708550 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -