BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021934 (680 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 93 1e-19 At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 93 1e-19 At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 93 1e-19 At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 93 1e-19 At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 93 1e-19 At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 93 1e-19 At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 92 3e-19 At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 92 3e-19 At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 92 3e-19 At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 49 3e-06 At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 49 3e-06 At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 49 3e-06 At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 49 3e-06 At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 49 3e-06 At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 49 3e-06 >At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana} Length = 450 Score = 93.5 bits (222), Expect = 1e-19 Identities = 41/42 (97%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426 >At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana} Length = 450 Score = 93.5 bits (222), Expect = 1e-19 Identities = 41/42 (97%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426 >At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis thaliana}; supporting cDNA gi|15451225|gb|AY054693.1| Length = 449 Score = 93.5 bits (222), Expect = 1e-19 Identities = 41/42 (97%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426 >At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana} Length = 449 Score = 93.5 bits (222), Expect = 1e-19 Identities = 41/42 (97%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426 >At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis thaliana} Length = 449 Score = 93.5 bits (222), Expect = 1e-19 Identities = 41/42 (97%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426 >At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis thaliana} Length = 447 Score = 93.5 bits (222), Expect = 1e-19 Identities = 41/42 (97%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVSEYQQYQ Sbjct: 386 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 427 >At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis thaliana} Length = 444 Score = 92.3 bits (219), Expect = 3e-19 Identities = 40/42 (95%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV+EYQQYQ Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426 >At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis thaliana} Length = 444 Score = 92.3 bits (219), Expect = 3e-19 Identities = 40/42 (95%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV+EYQQYQ Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426 >At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis thaliana} Length = 449 Score = 92.3 bits (219), Expect = 3e-19 Identities = 40/42 (95%), Positives = 42/42 (100%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQYQ 553 FTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV+EYQQYQ Sbjct: 386 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 427 >At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} Length = 450 Score = 48.8 bits (111), Expect = 3e-06 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559 F M+ ++AF+HWY GEGM+E EF+EA + L +Y++ Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 >At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} Length = 450 Score = 48.8 bits (111), Expect = 3e-06 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559 F M+ ++AF+HWY GEGM+E EF+EA + L +Y++ Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 >At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana} Length = 450 Score = 48.8 bits (111), Expect = 3e-06 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559 F M+ ++AF+HWY GEGM+E EF+EA + L +Y++ Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 >At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana} Length = 450 Score = 48.8 bits (111), Expect = 3e-06 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559 F M+ ++AF+HWY GEGM+E EF+EA + L +Y++ Sbjct: 395 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 >At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) identical to tubulin alpha-2/alpha-4 chain SP|P29510 GB:P29510 from [Arabidopsis thaliana] Length = 450 Score = 48.8 bits (111), Expect = 3e-06 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559 F M+ ++AF+HWY GEGM+E EF+EA + L +Y++ Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 >At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) nearly identical to SP:P29510 Tubulin alpha-2/alpha-4 chain from [Arabidopsis thaliana] Length = 450 Score = 48.8 bits (111), Expect = 3e-06 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 678 FTAMFRRKAFLHWYTGEGMDEMEFTEAESHMNDLVSEYQQ 559 F M+ ++AF+HWY GEGM+E EF+EA + L +Y++ Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,432,036 Number of Sequences: 28952 Number of extensions: 214964 Number of successful extensions: 550 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 550 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1438152744 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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