Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021933
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 52 1e-07
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 28 1.1
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 28 1.5
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 27 2.6
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 27 3.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 3.4
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 4.5
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 26 4.5
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 26 5.9
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa... 25 7.8
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 25 7.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 7.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 7.8
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 25 7.8
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 51.6 bits (118), Expect = 1e-07
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 APWPLYSMNWSVRPDKSFR-LALGSFVEEYNNKVQIISL---DEDTSEFT-AKSTFDHPY 424
APW ++++W + S +A+GS EE NN +Q++ L D+ S A++ D Y
Sbjct: 49 APWIPFALDWLKQGKYSSEWIAMGSLNEEPNNMIQLLKLITGDDGNSHLEKAQAATDLEY 108
Query: 425 PTTKIMWIPDSKGVYPD--LLATSGDYLRI 508
P TK++W P S G D LLA++ LR+
Sbjct: 109 PVTKLLWNPSSVGSNTDSQLLASTDQQLRL 138
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -2
Query: 408 VLFAVNSLVSSSREIICTLLLYSSTKLPR---ANLKLLSGLTDQFIEYNGHGAWFCIFLY 238
+L VN ++ E +L S P+ +N K L L+ E+ A F + +
Sbjct: 1119 LLLNVNGILDVLEEAFQLMLRLHSDIYPKICISNFKALRELSFSISEFGKENATFTLLIK 1178
Query: 237 VSCLNWYSNCCVASTSLIMFNVS 169
+ +NW C V+ + + N+S
Sbjct: 1179 LVFINWGRFCEVSFSERRLANIS 1201
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = -1
Query: 475 VWIHPLAIRYPHDLGGWVWVIKGTFCSELTCVFIKGNYLYF 353
+W + RY HDL I G + C + Y YF
Sbjct: 196 IWWSFIMFRYRHDLLQVQKYISGVVALSIVCTMVSTGYFYF 236
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 697 LHGPAQDLSSLQAPDGAVVSILLVPMRLGSIRS 599
+H D +S Q+ DG V +LL+ M +GS+ S
Sbjct: 314 VHHLFDDPTSFQSKDGGFVCMLLLSMAMGSLFS 346
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 622 LAPVVLTRLHHLGLGDWTGLGQVHE 696
L VVL+ L+ GLG +T +G HE
Sbjct: 231 LLSVVLSALYLTGLGFYTSIGSFHE 255
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +2
Query: 383 TSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDL--LATSGDYLRIGVPESRTHYSNVS*II 556
TSEF S+ HP + I D KG Y ++ L + GD + + R
Sbjct: 403 TSEFCISSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGGDLYTLIMAAGRLEPMEADCFF 462
Query: 557 IRILTSVLLLHPL 595
+++ V LH +
Sbjct: 463 KQLMRGVDYLHDM 475
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 599 QSKDVRGAQKSEFL-LLFRTHSNNVYGSPARLCVDNH 492
Q+K VR AQ LL S+ V+ + LC+ NH
Sbjct: 942 QTKAVRSAQHCYIQSLLLNERSSGVWANYGALCIQNH 978
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 548 RTHSNNVYGSPARLCVDNH 492
+TH NN G P C+D+H
Sbjct: 427 KTHFNNPIGQPQFTCLDDH 445
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -2
Query: 414 SKVLFAVNSLVSSSREIICTLLLYSSTKLPRANLKLLSGLTDQ 286
SKVL N + S T LLYS++ LPR++ +L++ T++
Sbjct: 122 SKVLIHQNLIPSLFSVSNSTKLLYSASLLPRSSERLVTLETNE 164
>SPCC18B5.06 |erf1|sup45|translation release factor
eRF1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 390 SLVSSSREIICTLLLYSSTKLPRANLKLLSGL 295
SLV +EI C + ++SS L LLSG+
Sbjct: 331 SLVEGVKEINCPVYIFSSLHESGKQLDLLSGI 362
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 635 TTGANEVRIHSFQSKDVRGAQKSEFLLLFRTHS----NNVYGSP 516
T+G+ + I+S S+ + + + FL++F HS +N Y SP
Sbjct: 468 TSGSKNIGIYSLLSRVLVISSTAYFLIMFVYHSSWVTSNAYSSP 511
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 154 QNGHQAALLCLI*IYLFKY*TVHELL 77
QNG + AL CL I+ F+ TV +L+
Sbjct: 1088 QNGFEDALRCLYGIHAFRLYTVEKLV 1113
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +2
Query: 512 VPESRTHYSNVS*IIIRILTSVL 580
VP+ +THY N +I+R++ ++
Sbjct: 802 VPDEKTHYENTYVMILRLIYGIV 824
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 676 LSSLQAPDGAVVSILLVPMRLGSIRSNQRM 587
+S+L VV+ILLVP++ S R N+R+
Sbjct: 472 VSTLNFSLSFVVAILLVPLQFISFRFNRRL 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,501
Number of Sequences: 5004
Number of extensions: 68359
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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