Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021933
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0044 - 19198001-19199236                                        111   4e-25
02_05_0322 - 27926619-27927686                                         51   8e-07
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    29   2.7  
09_02_0244 + 6196651-6196799,6197049-6197106,6197212-6197304           29   4.7  
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322...    28   8.1  
01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242...    28   8.1  

>02_04_0044 - 19198001-19199236
          Length = 411

 Score =  111 bits (268), Expect = 4e-25
 Identities = 47/84 (55%), Positives = 61/84 (72%)
 Frame = +2

Query: 257 QAPWPLYSMNWSVRPDKSFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTK 436
           +A W +Y MNWSVR DK +RLA+ S +E++NN VQ++ LDE + +     TFDHPYP TK
Sbjct: 40  EAGWHIYGMNWSVRRDKKYRLAIASLLEQHNNHVQVVQLDESSGDIAPVLTFDHPYPPTK 99

Query: 437 IMWIPDSKGVYPDLLATSGDYLRI 508
            M++PD   V PDLLATS D+LRI
Sbjct: 100 TMFVPDPHSVRPDLLATSADHLRI 123



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +1

Query: 523 PYTLFECVLNNNKNSDFCAPLTSFDWNE 606
           P     C LN N+NSD+C PLTSFDWN+
Sbjct: 153 PDVELRCELNGNRNSDYCGPLTSFDWND 180


>02_05_0322 - 27926619-27927686
          Length = 355

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
 Frame = +2

Query: 317 LALGSFVEEYNNKVQIISLDE---DTSEFTAKS--TFDHPYPTTKIMWIPDSKGVYPDLL 481
           LA GSF+E+ +N+V ++S D      + F A    +FDHPYP TK+ + P +    P LL
Sbjct: 42  LAAGSFLEDLHNRVSLLSFDPVHPTAASFRALPALSFDHPYPPTKLQFHPRAASA-PHLL 100

Query: 482 ATSGDYLRI 508
           A+S D LR+
Sbjct: 101 ASSSDALRL 109



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/23 (73%), Positives = 19/23 (82%), Gaps = 2/23 (8%)
 Frame = +1

Query: 544 VLNNNKNS--DFCAPLTSFDWNE 606
           VL+N K S  +FCAPLTSFDWNE
Sbjct: 131 VLDNRKTSASEFCAPLTSFDWNE 153


>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 574 CAPLTSFDWNEWILTSLAPVVLTRLHHLGLGDWT 675
           CA ++ F W+ + +TS        +H   LGDWT
Sbjct: 664 CAAVSPFQWHPFSITSAPQDDYVSVHIRTLGDWT 697


>09_02_0244 + 6196651-6196799,6197049-6197106,6197212-6197304
          Length = 99

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 287 WSVRPDKSFRLALGSFVEEYNNKVQIIS 370
           WS+R   +FR+A+G F +++    Q IS
Sbjct: 36  WSIRERVNFRIAIGRFGQDWPRVAQFIS 63


>05_06_0156 -
           26031463-26031572,26031961-26032039,26032133-26032261,
           26032362-26032559,26032741-26032900,26032980-26033147,
           26033290-26033405,26033491-26033586,26033675-26034058,
           26035150-26035572,26037202-26037315,26037969-26038017,
           26038103-26038262,26038345-26039014
          Length = 951

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 574 CAPLTSFDWNEWILTSLAPVVLTRLHHLGLGDWT 675
           C  ++ F+W+ + +TS        +H   LGDWT
Sbjct: 663 CPAVSPFEWHPFSITSAPGDDYLSIHVRQLGDWT 696


>01_06_0614 +
           30621495-30621670,30621817-30622036,30623848-30624270,
           30624523-30624906,30624991-30625086,30625161-30625276,
           30625431-30625598,30625685-30625844,30625999-30626196,
           30626304-30626432,30626595-30626673,30627010-30627119
          Length = 752

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 574 CAPLTSFDWNEWILTSLAPVVLTRLHHLGLGDWT 675
           C  ++ F+W+ + +TS        +H   LGDWT
Sbjct: 464 CPAVSPFEWHPFSITSAPGDDYLSIHVRQLGDWT 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,053,902
Number of Sequences: 37544
Number of extensions: 429751
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)