Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021933
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)                   151   7e-37
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)                  127   7e-30
SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)                  31   0.89 
SB_42193| Best HMM Match : DUF1168 (HMM E-Value=0.4)                   28   6.3  
SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26)               28   6.3  
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)                28   8.3  

>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
          Length = 609

 Score =  151 bits (365), Expect = 7e-37
 Identities = 65/84 (77%), Positives = 74/84 (88%)
 Frame = +2

Query: 257 QAPWPLYSMNWSVRPDKSFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTK 436
           +APW +Y MNWSVR DK FRLALGSFVEEYNNKVQI+ LDE+T EFT +STFDHPYPTTK
Sbjct: 24  EAPWTIYGMNWSVRTDKRFRLALGSFVEEYNNKVQIVMLDEETGEFTVRSTFDHPYPTTK 83

Query: 437 IMWIPDSKGVYPDLLATSGDYLRI 508
           I+WIPD+   YPDL+ATSGDYLR+
Sbjct: 84  IIWIPDNNS-YPDLVATSGDYLRV 106


>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
          Length = 596

 Score =  127 bits (307), Expect = 7e-30
 Identities = 53/67 (79%), Positives = 60/67 (89%)
 Frame = +2

Query: 257 QAPWPLYSMNWSVRPDKSFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTK 436
           +APW +Y MNWSVR DK FRLALGSFVEEYNNKVQI+ LDE+T EFT +STFDHPYPTTK
Sbjct: 24  EAPWTIYGMNWSVRTDKRFRLALGSFVEEYNNKVQIVMLDEETGEFTVRSTFDHPYPTTK 83

Query: 437 IMWIPDS 457
           I+WIPD+
Sbjct: 84  IIWIPDN 90


>SB_58550| Best HMM Match : DUF1065 (HMM E-Value=0.15)
          Length = 624

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = -1

Query: 565 NSYYYLGHIRIMCTALRHAYA*IITASCQQV-WIHPLAIRYPHDLGGWVWV--IKGTFCS 395
           N Y Y+  I+ +C  + H Y  ++ A    V W    A   P     W+ V  I G F S
Sbjct: 185 NRYQYIPIIKFICQLISHLYLIVLLAFTVVVPWEQSAANLLPR-FYEWMLVVWISGIFLS 243

Query: 394 ELTC-VFIKG-NYLYFVVVFLN 335
           ELT     KG N++  +VVFL+
Sbjct: 244 ELTAGRERKGLNWIPVLVVFLS 265


>SB_42193| Best HMM Match : DUF1168 (HMM E-Value=0.4)
          Length = 425

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 541 CVLNNNKNSDFCAPLTSFDWNEWILTSLAPVVLTRLHHLG 660
           C L++  + D    L SF+  + + TSLA  V++ LHH G
Sbjct: 159 CALHDRNSRD---DLRSFNSRDHLPTSLADKVISNLHHSG 195


>SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26)
          Length = 184

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 309 LLSGLTDQFIEYNGHGAWFCIFLYVSCLNWYSNCCVASTSLIMFNVSLP 163
           LL+GL  ++   +    +     + +C  W  NCCV S S+   NV LP
Sbjct: 36  LLAGLLSRWSITSSFWIYIHSKQFRTCKTWEHNCCVRSNSIP--NVDLP 82


>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
          Length = 594

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +2

Query: 263 PWPLYSMNWSVRPDKSFRLALGSFVEEYNNKVQIISLDEDTS----EFTAKSTFDHPYPT 430
           P  +YSM    R + S  +   S  + YN  V + +  + TS    E T  S    PY T
Sbjct: 377 PGTVYSMFAQQRTNISVAVK-DSKKKHYNAPVSVEACVQKTSPEPGEATPLSVIKQPYGT 435

Query: 431 TKIMWIPDSKGVYPDLLATSGDYLR 505
               +IP   G Y   +  +G+++R
Sbjct: 436 YGSTYIPHEDGDYKLSVTVNGEHVR 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,508,420
Number of Sequences: 59808
Number of extensions: 513628
Number of successful extensions: 1164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)