Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021933
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...   124   6e-29
Z79756-5|CAB02115.1|  388|Caenorhabditis elegans Hypothetical pr...    64   9e-11
U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81052-7|CAJ58492.1|  103|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    27   9.7  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    27   9.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   9.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   9.7  
AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score =  124 bits (299), Expect = 6e-29
 Identities = 74/154 (48%), Positives = 90/154 (58%), Gaps = 12/154 (7%)
 Frame = +2

Query: 260 APWPLYSMNWSVR--PDKSFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTT 433
           AP+ L+S  WS    P + FRLA+ SF+EEY+NK+ I+ LDE+  E   +STFDHPYP T
Sbjct: 147 APFTLFSHGWSAATDPSRKFRLAVSSFIEEYSNKIHIVQLDEEAGELVHRSTFDHPYPAT 206

Query: 434 KIMWIPDSKGVYPDLLATSGDYLR---IGVPESRTHYS----NVS*IIIRILTSV---LL 583
           KIMWIPD KG +PDLLATSGDYLR   IG   +    S    N +      LTS     L
Sbjct: 207 KIMWIPDQKGTFPDLLATSGDYLRLWRIGTDNNACIESLLNTNRTAEYCAPLTSFDWNEL 266

Query: 584 LHPLIGTNGS*PHWHQ*Y*HDCTIWGLETGQVLG 685
              LIGT+             CT+W LETGQ +G
Sbjct: 267 DMNLIGTSSIDT--------TCTVWQLETGQAIG 292



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 538 ECVLNNNKNSDFCAPLTSFDWNE 606
           E +LN N+ +++CAPLTSFDWNE
Sbjct: 243 ESLLNTNRTAEYCAPLTSFDWNE 265



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 606 MDPNLIGTSSIDTTAPSGAWRLDRSWA 686
           +D NLIGTSSIDTT     W+L+   A
Sbjct: 266 LDMNLIGTSSIDTTCT--VWQLETGQA 290


>Z79756-5|CAB02115.1|  388|Caenorhabditis elegans Hypothetical
           protein F53C11.8 protein.
          Length = 388

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
 Frame = +2

Query: 272 LYSMNWSVRPDKSFRLALGSFVE-EYN----NKVQIISLDEDTSEFTAKSTFDHPYPTTK 436
           LY+  WS + D  FRLA+G+  +   N    NKV I+ L ++T E    ++F   +P   
Sbjct: 59  LYASAWSNKNDIKFRLAVGTVSDVSVNPCAANKVSIVQLKDETGELVETASFPMEFPANA 118

Query: 437 IMWIPDSKGVYPDLLATSGDYLRI-GVPESRTH 532
           + +IPD   VYPDL+AT+ D LR+  V + + H
Sbjct: 119 VGFIPDPDNVYPDLIATTSDCLRLWRVVDGKVH 151



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 538 ECVLNNNKNSDFCAPLTSFDWNE 606
           + V+ NN NS + + LTSFDWNE
Sbjct: 153 DAVMINNTNSQYGSALTSFDWNE 175


>U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical
           protein F31E8.1 protein.
          Length = 249

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 419 PYPTTKIMWIPDSKGVYPDLLATSGD 496
           P P  K+ W P    ++P ++ATSGD
Sbjct: 114 PLPAGKLRWGPQVPSLFPHVIATSGD 139


>Z81052-7|CAJ58492.1|  103|Caenorhabditis elegans Hypothetical
           protein D2023.1b protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 400 CSELTCVFIKGNYLYFVVVFLNKTAQG*PETLV 302
           CSE  C  I GNY+Y V  F++    G PE L+
Sbjct: 15  CSEDDCWIIVGNYVYDVTKFVDLHPGG-PEILL 46


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 419 PYPTTKIMWIPDSKGVY--PDLLATSGDYLRI 508
           PY + K +WIPD +  Y   ++ AT GD + I
Sbjct: 26  PYDSKKNVWIPDPEEGYLAGEITATKGDQVTI 57


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 419 PYPTTKIMWIPDSKGVY--PDLLATSGDYLRI 508
           PY + K +WIPD +  Y   ++ AT GD + I
Sbjct: 26  PYDSKKNVWIPDPEEGYLAGEITATKGDQVTI 57


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
           protein.
          Length = 1966

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 419 PYPTTKIMWIPDSKGVY--PDLLATSGDYLRI 508
           PY + K +WIPD +  Y   ++ AT GD + I
Sbjct: 26  PYDSKKNVWIPDPEEGYLAGEITATKGDQVTI 57


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 377   EDTSEFTAKSTFDHPYPTTKIMWIPDSK 460
             ++  E T   T +HP   +K++W+ D K
Sbjct: 13977 KEGQEVTISVTLNHPIDISKVVWLKDGK 14004


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 377   EDTSEFTAKSTFDHPYPTTKIMWIPDSK 460
             ++  E T   T +HP   +K++W+ D K
Sbjct: 13977 KEGQEVTISVTLNHPIDISKVVWLKDGK 14004


>AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical
           protein Y41G9A.2 protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 480 NKSGYTPLLSGIHMILVVGYG*SKVLFAVNSLVSSSREII 361
           N  GY PL +   M  VVGYG +    A N +   S E+I
Sbjct: 17  NAVGYIPLETNSLMRTVVGYGSTCDAQAENKIAQCSEELI 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,338,297
Number of Sequences: 27780
Number of extensions: 387617
Number of successful extensions: 872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)