Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021932
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   147   1e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.53 
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    27   1.6  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   5.0  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   6.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   8.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  147 bits (357), Expect = 1e-36
 Identities = 67/106 (63%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
 Frame = +3

Query: 204 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 383
           K +   E  L     + ++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 384 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G  HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 25/37 (67%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64



 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 25/32 (78%), Positives = 29/32 (90%)
 Frame = +2

Query: 512 PHTVPCKVTGKCGSVTVRLIPAPRFTGIVSAP 607
           PHTVP KV+GKCGSVTVRL+PAPR  G+V+AP
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAP 181


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 142 RAHDHGRDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 17
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 502 RSEATHRPLQGHRQVWFCNSPADSCPSFYWN 594
           +S A    L G  +   C   + SCPS++WN
Sbjct: 151 QSRADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 256 SRSLISSSARP*MMKF*RSCLYRNKHVPDSAHVSRH 363
           SR+ I S+     +K+  S   R KH+P+   ++RH
Sbjct: 349 SRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 470 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 336
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -2

Query: 515 VASDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 336
           +++  VTP +SS+  + ++    +A   +    A+ HT  N   +V     C+    +  
Sbjct: 250 ISTVTVTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMA 308

Query: 335 TCLFLY 318
            C+FLY
Sbjct: 309 LCIFLY 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,965
Number of Sequences: 5004
Number of extensions: 48699
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)