Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021932
         (609 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   173   1e-43
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   173   1e-43
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   173   1e-43
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   173   1e-43
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   173   1e-43
AY089340-1|AAL90078.1|  790|Drosophila melanogaster AT15733p pro...    30   2.1  
AE013599-3474|AAM71125.1|  790|Drosophila melanogaster CG3622-PA...    30   2.1  
AE013599-3473|AAF46905.1| 1091|Drosophila melanogaster CG3622-PB...    30   2.1  
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr...    29   5.0  
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot...    29   5.0  
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB...    29   5.0  
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA...    29   5.0  
BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p pro...    28   8.7  
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    28   8.7  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  173 bits (422), Expect = 1e-43
 Identities = 87/106 (82%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
 Frame = +3

Query: 204 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 383
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 384 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +2

Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSAP 607
           KPHTVPCKVTGKCGSV+VRLIPAPR TGIVSAP
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAP 191



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
           KED KEWVPVTKLGRLVR+GKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  173 bits (422), Expect = 1e-43
 Identities = 87/106 (82%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
 Frame = +3

Query: 204 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 383
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 384 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +2

Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSAP 607
           KPHTVPCKVTGKCGSV+VRLIPAPR TGIVSAP
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAP 191



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
           KED KEWVPVTKLGRLVR+GKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  173 bits (422), Expect = 1e-43
 Identities = 87/106 (82%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
 Frame = +3

Query: 204 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 383
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 384 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +2

Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSAP 607
           KPHTVPCKVTGKCGSV+VRLIPAPR TGIVSAP
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAP 191



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
           KED KEWVPVTKLGRLVR+GKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  173 bits (422), Expect = 1e-43
 Identities = 87/106 (82%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
 Frame = +3

Query: 204 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 383
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 384 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +2

Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSAP 607
           KPHTVPCKVTGKCGSV+VRLIPAPR TGIVSAP
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAP 191



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
           KED KEWVPVTKLGRLVR+GKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  173 bits (422), Expect = 1e-43
 Identities = 87/106 (82%), Positives = 90/106 (84%), Gaps = 1/106 (0%)
 Frame = +3

Query: 204 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 383
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 384 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG  HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +2

Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSAP 607
           KPHTVPCKVTGKCGSV+VRLIPAPR TGIVSAP
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAP 191



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
           KED KEWVPVTKLGRLVR+GKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>AY089340-1|AAL90078.1|  790|Drosophila melanogaster AT15733p
           protein.
          Length = 790

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 235 TSKCSRVCRFFLCEQDGRVW*QEPTLSGLPC 143
           T     +CR   C QDG  W   P L G  C
Sbjct: 238 TQSKMEICRDLHCRQDGLPWTSHPALEGTEC 268


>AE013599-3474|AAM71125.1|  790|Drosophila melanogaster CG3622-PA,
           isoform A protein.
          Length = 790

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 235 TSKCSRVCRFFLCEQDGRVW*QEPTLSGLPC 143
           T     +CR   C QDG  W   P L G  C
Sbjct: 238 TQSKMEICRDLHCRQDGLPWTSHPALEGTEC 268


>AE013599-3473|AAF46905.1| 1091|Drosophila melanogaster CG3622-PB,
           isoform B protein.
          Length = 1091

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 235 TSKCSRVCRFFLCEQDGRVW*QEPTLSGLPC 143
           T     +CR   C QDG  W   P L G  C
Sbjct: 539 TQSKMEICRDLHCRQDGLPWTSHPALEGTEC 569


>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
            protein.
          Length = 1711

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 418  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSEATHRP 525
            RKSP    + L+L+SC+  Q ++    T SEA   P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEPP 1071


>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon protein.
          Length = 1695

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 418  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSEATHRP 525
            RKSP    + L+L+SC+  Q ++    T SEA   P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEPP 1071


>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
            isoform B protein.
          Length = 1695

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 418  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSEATHRP 525
            RKSP    + L+L+SC+  Q ++    T SEA   P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEPP 1071


>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
            isoform A protein.
          Length = 1711

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 418  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSEATHRP 525
            RKSP    + L+L+SC+  Q ++    T SEA   P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEPP 1071


>BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p
           protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 151 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRNRREN-RHVHRLEQRPPLLN 8
           L C  H    D  R+H  ++GL +  V+   REN   VH + ++  LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
           protein.
          Length = 1958

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 151 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRNRREN-RHVHRLEQRPPLLN 8
           L C  H    D  R+H  ++GL +  V+   REN   VH + ++  LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,309,348
Number of Sequences: 53049
Number of extensions: 601163
Number of successful extensions: 3212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2532
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)