Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021932
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   144   6e-35
AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of...    29   2.0  
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   4.5  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   4.5  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  144 bits (348), Expect = 6e-35
 Identities = 72/91 (79%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
 Frame = +3

Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
           + FEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIG-SHT 518
           TAIRGAI+ AKL+V+PVRRGYWGNKIG  HT
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLPHT 175



 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 29/32 (90%), Positives = 29/32 (90%)
 Frame = +2

Query: 512 PHTVPCKVTGKCGSVTVRLIPAPRFTGIVSAP 607
           PHTVPCKVTGKC SV VRLIPAPR TGIVSAP
Sbjct: 173 PHTVPCKVTGKCASVMVRLIPAPRGTGIVSAP 204



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 24/36 (66%), Positives = 28/36 (77%)
 Frame = +1

Query: 148 EDQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
           E + EW PVTKLGRLV++ KI  LE IYL SLPIK+
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87


>AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of
           mec and unc defectsprotein 2 protein.
          Length = 547

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 142 RAHDHGRDHDRVHE-DRRGLYLHRVIRNRRENRHVHRLEQR 23
           R+ D  RD DR  + D R  Y  +   +RRE     R +QR
Sbjct: 350 RSRDRSRDRDRDRDRDNRDRYFEKSANSRREEEQNRREQQR 390


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 488 TSSNW*NRQLSKDNSASNGSG 426
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 302 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 445
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 302 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 445
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 148 PCRAHDHGRDHDRVHEDRRGLYLHRVIRNRRENRHVHR 35
           P RAH+ G+ H+R H        H   RN  ++R+ HR
Sbjct: 60  PARAHNRGQHHNRGHH-------HGPPRNHNQDRNRHR 90


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 148 PCRAHDHGRDHDRVHEDRRGLYLHRVIRNRRENRHVHR 35
           P RAH+ G+ H+R H        H   RN  ++R+ HR
Sbjct: 904 PARAHNRGQHHNRGHH-------HGPPRNHNQDRNRHR 934


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,510
Number of Sequences: 27780
Number of extensions: 294898
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)