Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021932
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     27   0.11 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.0  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 177 QTRPSCSQRKNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 353
           +T PS   +  R+  EH L  F N ++  + +FL    N        ++K T   Q  R
Sbjct: 192 ETFPSVYSKTRRRALEHTLDRFHNDKYSNVPYFLFGDFNFRTDTAGVIKKLTEDTQERR 250



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -1

Query: 237 KQVNALEFVDFSFANKTAEFGDRNPLFLVF 148
           + +++ + V++     T   GD  P+FL F
Sbjct: 355 QDISSPDAVEYGIIGPTTCMGDHKPVFLEF 384


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 204 KNRQTREHLLVFFT 245
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 204 KNRQTREHLLVFFT 245
           KN QTREH L+ FT
Sbjct: 56  KNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 204 KNRQTREHLLVFFT 245
           KN QTREH L+ FT
Sbjct: 72  KNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 204 KNRQTREHLLVFFT 245
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 385 TVILVWV*SAARKSPL 432
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 200 KEKSTNSRAFTCFLYQSKIRDH*FLPRPV 286
           KEK    R  +C L + +  +  FL RP+
Sbjct: 1   KEKHLTQRINSCDLLKKRNENDPFLKRPI 29


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +1

Query: 148 EDQKEWVPVTKLGRLVRKGKI 210
           +D+ +W   +++ + V+KG+I
Sbjct: 494 KDKSDWFDYSEVSKWVQKGQI 514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,531
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)