Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021932
(609 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 162 2e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 161 2e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 161 4e-40
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 161 4e-40
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 161 4e-40
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 161 4e-40
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 8e-06
At3g01450.1 68416.m00069 expressed protein 29 2.4
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.2
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.2
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 5.6
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 5.6
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 5.6
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.6
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 7.4
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 7.4
At5g47430.1 68418.m05844 expressed protein 27 9.7
At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s... 27 9.7
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 9.7
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s... 27 9.7
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 162 bits (393), Expect = 2e-40
Identities = 73/91 (80%), Positives = 84/91 (92%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+P+RRGYWGNKIG HT
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSA 604
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 192
Score = 57.6 bits (133), Expect = 6e-09
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
++++WVPVTKLGRLV++GKI K+E IYL SLP+K+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 161 bits (392), Expect = 2e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSA 604
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 201
Score = 51.6 bits (118), Expect = 4e-07
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
++++WVPVTKLGRLV G I ++E IYL SLP+K+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 161 bits (390), Expect = 4e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSA 604
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 161 bits (390), Expect = 4e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSA 604
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 161 bits (390), Expect = 4e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSA 604
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 161 bits (390), Expect = 4e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 429 TAIRGAIILAKLSVLPVRRGYWGNKIGS-HT 518
TAIRGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 509 KPHTVPCKVTGKCGSVTVRLIPAPRFTGIVSA 604
KPHTVPCKVTGKCGSVTVR++PAPR +GIV+A
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 151 DQKEWVPVTKLGRLVRKGKIDKLESIYLFSLPIKD 255
++ +WVPVTKLGRLV KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 294 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 473
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 474 PV 479
V
Sbjct: 209 QV 210
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 511 LPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 332
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 331 VCF 323
CF
Sbjct: 222 TCF 224
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -3
Query: 502 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 323
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 322 CTGMIFRTSSFR 287
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 360 AFVAIGDNNGHIGLGVKCSKE 422
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 124 RDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 17
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 124 RDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 17
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 124 RDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 17
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 515 HTVPCKVTGKCGSVTVRL 568
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 340 PARVCFCTGMIFRTSSFRDGPRKKSMISNL*LVKKTSK 227
P R FC+G+ +S + PR+KS +S+ KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 512 ASDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 408
++D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 403 STDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 133 DHGRDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 17
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-2) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
Length = 280
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 496 VTRSEATHRPLQGHRQVWFCNSPADSCPSFYWN 594
+ +S+ L G + C + SCPS++WN
Sbjct: 177 ILQSKKDRAKLDGMYECILCACCSTSCPSYWWN 209
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 166 PTLSGLPCRAHDHGRDHDRV-HEDRRGLYLHRVIRNRRENRHVH 38
P S R HD GRD DR H DR + R+RRE H
Sbjct: 882 PRKSSTRERDHDLGRDRDRERHRDRDRQHDLNRDRDRREKSSSH 925
>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-1) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
Length = 279
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 496 VTRSEATHRPLQGHRQVWFCNSPADSCPSFYWN 594
+ +S+ L G + C + SCPS++WN
Sbjct: 178 ILQSKKDRAKLDGMYECILCACCSTSCPSYWWN 210
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,941,126
Number of Sequences: 28952
Number of extensions: 276485
Number of successful extensions: 799
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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