Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021929
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 47 2e-06
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 41 2e-04
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 40 4e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 36 0.004
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 32 0.094
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.22
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 30 0.38
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 0.66
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.66
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 27 2.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 2.7
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.7
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 4.7
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 4.7
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 26 4.7
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 6.1
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 6.1
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 6.1
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 8.1
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 260 FTVQKTLDSHMNLHKGLRPYRCKTCPAAYTSPTALSRHEKKHLDVQ-YICDHCGRAFKIK 436
FT L SHMN H RP++C C ++ RHE+ H ++ + C C + F
Sbjct: 581 FTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARM 640
Query: 437 EALIPH 454
+AL H
Sbjct: 641 DALNRH 646
Score = 33.1 bits (72), Expect = 0.041
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 257 TFTVQKTLDSHMNLHKGLRPYRCKTCPAAYTSPTALSRHEKKHL 388
+F Q H LH G++ + C TC + AL+RH K +
Sbjct: 608 SFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKSEV 651
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 398 YICDH--CGRAFKIKEALIPHLDTHKPYRKFGCHL 496
Y+C C + F L H++TH YR F C +
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSI 604
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 278 LDSHMNLHKGLRPYRCKTCPAAYTSPTALSRHEKKHLDVQ-YICDHCGRAFKIKEALIPH 454
++SH+ H RPYRC C A + L RH + H + + Y+C+ C + F +AL H
Sbjct: 460 VESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRH 518
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +2
Query: 371 HEKKHL-DVQYICDHCGRAFKIKEALIPHLDTHKPYRKFGC 490
H + HL D Y CD C F L HL H+ R + C
Sbjct: 463 HIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC 503
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 293 NLHKGLRPYRC--KTCPAAYTSPTALSRHEKKHLDVQ-YICDH--CGRAFKIKEALIPHL 457
NL + + C + C Y+ P+ L +H + H + + ++CD+ C +AF K L H
Sbjct: 15 NLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHK 74
Query: 458 DTHKPYRKFGCH 493
H + F CH
Sbjct: 75 RCHTNVKPFSCH 86
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 278 LDSHMNLHKGLRPYRCKT--CPAAYTSPTALSRHEKKHLDVQ-YIC--DHCGRAFKIKEA 442
L+ H+ H RP+ C C A+ + L H++ H +V+ + C D C F ++
Sbjct: 40 LEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQH 99
Query: 443 LIPHLDTHKPYRKFGC 490
L H++ H+ + + C
Sbjct: 100 LERHIEVHRKPKPYAC 115
Score = 32.3 bits (70), Expect = 0.071
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Frame = +2
Query: 287 HMNLHKGLRPYRC--KTCPAAYTSPTALSRHEK--KHLDVQYICDHCGRAFKIKEALIPH 454
H + + Y C + C ++T +AL +H ++ + CD CG F K L H
Sbjct: 226 HQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRH 285
Query: 455 LD------THKPY 475
L+ HKPY
Sbjct: 286 LERGTCKKAHKPY 298
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 332 CPAAYTSPTALSRHEKKHLDVQ-YICDHCGRAFKIKEALIPHL 457
CP ++T L RHE+ H +V+ + C C RAF + L H+
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHV 75
Score = 32.3 bits (70), Expect = 0.071
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 257 TFTVQKTLDSHMNLHKGLRPYRCKTCPAAYTSPTALSRH-EKKHLDVQYICD 409
+FT ++ L H H+ ++ + C C A+ L+RH ++ HL Q + +
Sbjct: 36 SFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSE 87
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 389 DVQYICDH--CGRAFKIKEALIPHLDTHKPYRKFGC 490
D ++ C + C ++F KE L H TH+ + F C
Sbjct: 23 DPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSC 58
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 31.9 bits (69), Expect = 0.094
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Frame = +2
Query: 236 PMQRMLATFTVQKTLDSHMNLHKGLRPYRCKTCPAAYTS---PTALSRHEKKHLDV---- 394
P+ T + K ++ M+++ T P++ TS P A S KK +
Sbjct: 8 PIASKANTLSESKVSENLMSINSDSGTSNANT-PSSVTSNSKPVASSTAAKKDPNAPPQK 66
Query: 395 --QYICDHCGRAFKIKEALIPHLDTHKPYRKFGC 490
QY+C+ C RAF E L H+ +H + F C
Sbjct: 67 VKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 317 YRC--KTCPAAYTSPTALSRHEKKHLDVQ-YICDHCGRAFKIKEALIPHLD 460
Y+C + C ++T RH + H + + +IC HC +F + L H++
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVN 67
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 221 VQQEVPMQRMLATFTVQKTLDSHMNLHKGLRPYRCKTCPAAYTSPTALSRH-EKKHL 388
++ + Q +FT ++ H H + + C C +++T L+RH +KH+
Sbjct: 15 IRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHV 71
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 311 RPYRCKTCPAAYTSPTALSRHEKKHL-DVQYICDH--CGRAFKIKEALIPHLDTH 466
RPY+C C A+ +RH + H + ++C C + F + L H H
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIH 78
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 562 PPPCACPVCPKRFPRMSLLKTHMMSEHG 645
P P CP+C K F R+ H+ + G
Sbjct: 23 PRPYKCPLCTKAFYRLEHQTRHIRTHTG 50
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 29.1 bits (62), Expect = 0.66
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Frame = +1
Query: 223 PTRSSNAANARNVHSSEDIRFAHESPQGLETVP--V*DLSGCVHVAYRF-ISPREETFRR 393
P N++ +HSS+D + SP L+ VP + S + + I+ RE F R
Sbjct: 408 PKSPLNSSQEVTIHSSQDRQSPPSSP--LKDVPSQINPFSPSLRLKGGSPITKREIEFCR 465
Query: 394 SVHLR--SLRPRVQDQRSSDTSLGYTQTVSQVRVPPVRPADAQKAALQLHIDRVHRNLPP 567
+ R S P D R + L Y++ + + P D L H V++ PP
Sbjct: 466 DLPNRPTSSEPNQGDTRKAGKRLKYSRNLDDYHICTQIPEDYSPKFLSQHESFVYKQQPP 525
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 202 NHQEFSSPTRSSNAANARNVHSSEDIRFAHESPQGLETVPV*DLSGCV 345
N +F P +S AA R+VHS + + E + DLSG +
Sbjct: 198 NDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRDAPAAAATDLSGII 245
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +2
Query: 251 LATFTVQKTLDSHMNLHKGLRPYRCKTCPAAYTSPTAL----SRHEKKHLDVQYICDHCG 418
L + V+ T SH P K CP + SR + + Y+C HCG
Sbjct: 48 LQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCG 107
Query: 419 RAFK 430
AF+
Sbjct: 108 FAFE 111
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 577 CPVCPKRFPRMSLLKTHMMSEH 642
CP C K+F R L+ H+ S H
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLH 446
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 523 ALQLHIDRVHRNLPPPCACPVCPKRFPRMSLLKTHMMSEH 642
AL H+ P C+ P C + F R L HM + H
Sbjct: 92 ALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 190 ITRINHQEFSSPTRSSNAANARNVHSSEDIR 282
I ++N+Q FS+P R + A+ +N+ + ++R
Sbjct: 231 IKKLNNQTFSTPIRVVSLASRKNLCINNEVR 261
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +2
Query: 311 RPYRCKTCPAAYTSPTALSRHE-KKHLDV 394
+PYRC+ C Y + L H HL V
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYHRTHSHLQV 425
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 568 PCACPVCPKRFPRMSLLKTHMMSEH 642
P C VC KR+ ++ LK H H
Sbjct: 398 PYRCEVCSKRYKNLNGLKYHRTHSH 422
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 39 LICFACGVDFRSKTNLYKHEKRCIS 113
LIC C F T L HE C++
Sbjct: 175 LICSKCNTTFNHSTALMMHEATCLN 199
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 398 YICDHCGRAFKIKEALIPHLDTHKPYRKFGC 490
Y C C R F +E + H+ +H + F C
Sbjct: 4 YECPFCKRVFHRQEHQVRHIRSHTGEKPFEC 34
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 634 SEHGLNIMTRKMFFKKLPTLSESEMK 711
S +G++ M ++ FKK+PT+S +E++
Sbjct: 112 SPNGIDEMKKQQQFKKIPTVSITEVE 137
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 592 KRFPRMSLLKTHMMSEHGLNIMTRKMFFKKLPTLSES 702
KR P LL+ +SE GL K+F P++S+S
Sbjct: 220 KRIPVQYLLQMRALSETGLLYQELKVFSNYDPSVSQS 256
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 568 PCACPVCPKRFPRMSLLKTHMMSEH 642
P CP C + R LLK H+ H
Sbjct: 58 PIPCPYCEIKCKRKDLLKRHIQRFH 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,989
Number of Sequences: 5004
Number of extensions: 46778
Number of successful extensions: 201
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -