Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021928
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0228 - 16008333-16008752                                         29   2.7  
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695...    29   4.8  

>10_08_0228 - 16008333-16008752
          Length = 139

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -2

Query: 603 HPPL-RLPINTAWSNFIILILNYYC--LTIIA*VEKNAMQ*LYCGSPRVPHVFFICHGWI 433
           H P+ R P+ T  +    ++ +     LTII  V  NA   L   +P +P+ F +CHG++
Sbjct: 57  HTPVPRRPMTTCTNAVYAIVTSAIVDSLTIIRFVWGNAEFGLGKAAPAIPYAFRLCHGYL 116


>10_03_0007 -
           6956215-6956223,6957082-6957300,6957874-6957978,
           6958062-6958175,6958342-6958467,6958583-6958697,
           6958791-6958867,6958956-6959179,6959848-6959953,
           6960065-6960163,6960282-6960467,6960611-6960613
          Length = 460

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 591 RLPINTAWSNFIILILNYYCLTIIA*VEKNAMQ*LYCGSP 472
           R P+ T+W+  +  I+ Y  L + +  E+NA   L   SP
Sbjct: 296 RKPLKTSWNEAVFGIIKYLLLQVASLSEENAFALLKADSP 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,913
Number of Sequences: 37544
Number of extensions: 312232
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)