Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021928
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40470| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=5.5)              33   0.17 
SB_1608| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.17 
SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)                  29   2.8  
SB_56008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)           29   4.9  
SB_52735| Best HMM Match : rve (HMM E-Value=0.23)                      28   6.4  
SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089)                    28   8.5  
SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_40470| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=5.5)
          Length = 113

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 349 FAFHYIH*LNERLRLETTTCNYFVKVFDNPSMTNKKHVWHSGTAAVKLLHSIFFNLCN 522
           + FH    L+E+L   TTT + ++ +F+    T +  +  SGT AV +L ++FF + N
Sbjct: 14  YLFHVFQCLDEKLN--TTTDSRYLSIFNEADNT-QSWLKRSGTVAVIVLGAVFFTIIN 68


>SB_1608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 349 FAFHYIH*LNERLRLETTTCNYFVKVFDNPSMTNKKHVWHSGTAAVKLLHSIFFNLCN 522
           + FH    L+E+L   TTT + ++ +F+    T +  +  SGT AV +L ++FF + N
Sbjct: 14  YLFHVFQCLDEKLN--TTTDSRYLSIFNEADNT-QSWLKRSGTVAVIVLGAVFFTIIN 68


>SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
          Length = 1463

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 311 EVL*VRAGRYHRPAYFYREL*MGDVLVRPLSNK--KNTICILSSDLNMDHVQYQRQEITN 138
           E++ VR  R    + ++  + M DVLV   S +  KN++     D   DH++Y   E+ N
Sbjct: 120 EIVAVRHDRRREASPYWLAVMMEDVLVIAASGRFQKNSVTFRWLDQTDDHLKYTFDEVCN 179

Query: 137 KN 132
            N
Sbjct: 180 GN 181


>SB_56008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 311 EVL*VRAGRYHRPAYFYREL*MGDVLVRPLSNK--KNTICILSSDLNMDHVQYQRQEITN 138
           E++ VR  R    + ++  + M DVLV   S +  KN++     D   DH++Y   E+ N
Sbjct: 76  EIVAVRHDRRREASPYWLAVMMEDVLVIAASGRFQKNSVTFRWLDQTDDHLKYTFHEVCN 135

Query: 137 KN 132
            N
Sbjct: 136 GN 137


>SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 311 EVL*VRAGRYHRPAYFYREL*MGDVLVRPLSNK--KNTICILSSDLNMDHVQYQRQEITN 138
           E++ VR  R    + ++  + M DVLV   S +  KN++     D   DH++Y   E+ N
Sbjct: 523 EIVAVRHDRRREASPYWLAVMMEDVLVIAASGRFQKNSVTFRWLDQTDDHLKYTFDEVCN 582

Query: 137 KN 132
            N
Sbjct: 583 GN 584


>SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)
          Length = 720

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/66 (34%), Positives = 29/66 (43%)
 Frame = +2

Query: 149 PASDIERDPYLGLSSKYKLCFFYCLVDGRAHHPSTIHGRNRQGGGTYPRGLTRLPNTRNY 328
           P S  + DPY    +K  LCF   L +G  HH  + H         Y   L+RL N+   
Sbjct: 496 PLSRYDADPY----AKKILCFGDSLTNGYNHHGRSFH--------PYSIMLSRLLNSNPA 543

Query: 329 ANYNLT 346
           A Y LT
Sbjct: 544 AKYKLT 549


>SB_52735| Best HMM Match : rve (HMM E-Value=0.23)
          Length = 299

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 663 IAGIESGDRIKKFRNENKT*HPPLRLPINTAWS 565
           +AG    D IK  R   K   PPL +P+ T+WS
Sbjct: 114 MAGFALKDVIKLRRVPLKAKKPPLEVPLETSWS 146


>SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 311 EVL*VRAGRYHRPAYFYREL*MGDVLVRPLSNK--KNTICILSSDLNMDHVQYQRQEITN 138
           E++ VR  R    + ++  + M DVLV   + +  KN++     D   DH++Y   E+ N
Sbjct: 76  EIVAVRHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDHLKYTFHEVCN 135

Query: 137 KN 132
            N
Sbjct: 136 GN 137


>SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 311 EVL*VRAGRYHRPAYFYREL*MGDVLVRPLSNK--KNTICILSSDLNMDHVQYQRQEITN 138
           E++ VR  R    + ++  + M DVLV   + +  KN++     D   DH++Y   E+ N
Sbjct: 157 EIVAVRHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDHLKYTFHEVCN 216

Query: 137 KN 132
            N
Sbjct: 217 GN 218


>SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089)
          Length = 723

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 693 ERILSYCIAFIAGIESGDRIKK 628
           +RI SYC   I G+ S D IKK
Sbjct: 577 QRIASYCTTPITGVRSKDTIKK 598


>SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1381

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 311  EVL*VRAGRYHRPAYFYREL*MGDVLVRPLSNK--KNTICILSSDLNMDHVQYQRQEITN 138
            +++ VR  R      ++  + M DVLV   + +  KN++     D   DH++Y  QE+ N
Sbjct: 860  DIVAVRHDRRREAFPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDHLKYTFQEVCN 919

Query: 137  KN 132
             N
Sbjct: 920  GN 921


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,611,071
Number of Sequences: 59808
Number of extensions: 374425
Number of successful extensions: 739
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)