Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021928
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04420.1 68414.m00433 aldo/keto reductase family protein Simi...    30   1.3  
At1g71990.1 68414.m08321 alpha-(1,4)-fucosyltransferase / galact...    29   4.0  

>At1g04420.1 68414.m00433 aldo/keto reductase family protein Similar
           to SP|Q46933 Tas protein {Escherichia coli}, Babesia
           aldo-keto reductase SP|P40690; contains Pfam profile
           PF00248: oxidoreductase, aldo/keto reductase family
          Length = 412

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
 Frame = -1

Query: 523 NCIS*KKCYAIALLRQSQSATRVFYLSWMDCQKPSQNSCMLWSRV*GVRSINEYNEKQTC 344
           NCI   + Y I + +++Q  T ++  SW+  Q+  ++  +L ++V G    + Y  + + 
Sbjct: 100 NCIDTAEAYPIPMKKETQGKTDLYISSWLKSQQ--RDKIVLATKVCGYSERSAY-IRDSG 156

Query: 343 QIIICVITGVRKSCESA--RVGTTALPISTVN 254
           +I+      +++S E +  R+GT  + +  ++
Sbjct: 157 EILRVDAANIKESVEKSLKRLGTDYIDLLQIH 188


>At1g71990.1 68414.m08321 alpha-(1,4)-fucosyltransferase /
           galactoside 3(4)-L-fucosyltransferase (FUT13) (FucTC)
           identical to SP|Q9C8W3 Alpha-(1,4)-fucosyltransferase
           (EC 2.4.1.-) (FT4-M) (Galactoside 3(4)-
           L-fucosyltransferase) (FucTC) (AtFUT13) {Arabidopsis
           thaliana}; identical to cDNA alpha1,3-fucosyltransferase
           homologue (FucTC) GI:13992485
          Length = 401

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 525 IIA*VEKNAMQ*LYCGSPRVPHVFFICHG--WIVKNLHKIVAC-CGL 394
           I+  V   ++Q   CG  ++ HV  +  G  WI  NL  + +C CG+
Sbjct: 82  ILGNVSSGSLQEFGCGKLKMKHVKVLVKGWTWIPDNLENLYSCRCGM 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,973
Number of Sequences: 28952
Number of extensions: 259733
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)