Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021927
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   2.1  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   4.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   4.8  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   4.8  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   6.3  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   8.3  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 502 GCELGLTDTQVKTWYQNRRTKWK 570
           G EL + +  V  W+QNRR K K
Sbjct: 200 GRELNIPERSVTIWFQNRRAKSK 222


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = -1

Query: 419 LYALSSASWPDQTRHLRSSYSTRHQNHLSHLVNQWLICHCRSPDVR*DPVAARQE 255
           +Y +   +W   T  L    S    NHL HL++    C         D +  RQE
Sbjct: 412 IYDILRTAWDTSTPRLEQYASEYMANHLEHLIDDPEFCELVKESA--DRILQRQE 464


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +2

Query: 446  LEKSFERQK-YLSVQDRMELAANWA*PTPKSKLGTRTDGQNGNVKRQSAWSF*QKLGTMR 622
            ++K+F  Q   LS+Q RM    +   P+ K       DG N   K Q  W    K    R
Sbjct: 1430 IQKNFSNQMCLLSIQYRMHPDISHF-PSKKFYDSRLEDGDNMAEKTQQVWHVNPKFTQYR 1488

Query: 623  LFSV 634
            LF V
Sbjct: 1489 LFDV 1492


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/79 (24%), Positives = 30/79 (37%)
 Frame = +3

Query: 447 LRSPSNDKSTSAYRIGWSWLRTGPDRHPSQNLVPEPTDKMETSNGSRLGASSRSWELCGF 626
           LR  S  K  + Y     WL+   D H S  L  +P  K+E            ++E    
Sbjct: 719 LRGTSYKKLGNQYYNDTQWLKDNLDSHLSHTLSEDPLIKVEELEEKAKRLQELTYEYLRR 778

Query: 627 SASVRRILGKRASLSYPTS 683
           S    ++  K+ + S  T+
Sbjct: 779 SLQQPKLKAKKGASSSSTA 797


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 468 KSTSAYRIGWSWLRTGPDRHPSQNLVPEPTDKMETSNGSRLGASSRSWELCGFSASVRRI 647
           + T A+   W    + P RH S + + + T   ++S  S  G+   SW+   F +S+   
Sbjct: 220 RHTRAHSDFWIPATSKPSRHASHSSIGDLTTITQSSISSGSGSFKPSWD-GSFDSSL--- 275

Query: 648 LGKRASLSYPTSP 686
               A  SY TSP
Sbjct: 276 ---MAHQSYGTSP 285


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 411 RVQHLPTINYRPLRSPSNDKSTS 479
           R+  L   NY PL SPS+ + TS
Sbjct: 344 RIPKLNASNYSPLLSPSSHRKTS 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,575
Number of Sequences: 5004
Number of extensions: 46506
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)