Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021926X
         (452 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   1.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   1.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   9.4  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   9.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.4  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 58  PPKRHNGSPSGNRHQQFPSQASTLP 132
           P    + SPSG+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 58  PPKRHNGSPSGNRHQQFPSQASTLP 132
           P    + SPSG+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 46  RQHHPPKRHNGSPSGNRHQQ 105
           RQ  PP  + G PSG +  Q
Sbjct: 57  RQGIPPHHYGGPPSGGQPPQ 76


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 441 GGAVMATRWMVLARVT 394
           GG  +  RWM L  +T
Sbjct: 652 GGGKLPVRWMALESLT 667


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 196 RSQGQADFVGYLCHE 152
           R Q Q  F G  CHE
Sbjct: 53  RCQCQPGFTGKYCHE 67


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 96   AVSTRGAVMAFRW 58
            A +T GA++AF W
Sbjct: 1029 AGTTPGAILAFSW 1041


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,518
Number of Sequences: 336
Number of extensions: 2027
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)