Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021926X
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   1.8  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   3.1  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.2  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 284 PSAISVTSFNFTHIRLIPSSCKILIPYFSSMAFTN 388
           PS +S ++ NF     IP S   L+P +    F N
Sbjct: 349 PSGLSASNSNFASSSFIPQSVPQLLPIYYQTIFYN 383


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 266 LP*WKPPSA---ISVTSFNFTHIRLIPSSCKILI 358
           LP +KPPS    I++ +FN T    IPSS  ILI
Sbjct: 447 LPSYKPPSNGSNIAINAFNETVGDRIPSSKDILI 480


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 299 VTSFNFTHIRLIPSSCKILIPYFSSMAFTNLVV 397
           +TSF+F H++ I  S     PY  ++ F  LV+
Sbjct: 67  MTSFDFDHVQQILLSAVQPYPYDKNLMFVYLVI 99


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 275 WKPPSAISVTSFNFTHIRLIPSSCKILIPY 364
           WK P  I+ T+F F   +  PSS  ++  Y
Sbjct: 121 WKCPLTINTTTFKFLTRKNNPSSMSLVSNY 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,774
Number of Sequences: 5004
Number of extensions: 31944
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)