Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021926X
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002...    28   3.1  
02_02_0450 - 10381360-10381391,10381737-10382283,10382770-103829...    28   3.1  
04_01_0623 - 8198301-8198504,8198805-8198907,8199065-8199144,819...    27   5.3  
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996...    27   7.1  
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539...    27   9.3  
06_01_0227 - 1733119-1734099                                           27   9.3  
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247...    27   9.3  

>03_06_0523 +
           34499533-34499705,34499808-34499917,34500037-34500224,
           34500984-34501451
          Length = 312

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 46  RQHHPPKRHNGSPSGNRHQQFPSQA 120
           R H PP  H   PS    Q+FP +A
Sbjct: 178 RHHEPPMSHKKFPSSAGEQRFPDRA 202


>02_02_0450 -
           10381360-10381391,10381737-10382283,10382770-10382952,
           10383123-10383863
          Length = 500

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 266 LP*WKPPSAISVTSFNFTHIRLIPSSCKILIPYFSSMAFTNLVVTLANTI 415
           +P W PPS +S+TS       L+ S  + L  + SS+    +++    TI
Sbjct: 300 VPPWPPPSLVSLTSLASKESNLVISDPESLSVWLSSIDLWGMLLNYYPTI 349


>04_01_0623 -
           8198301-8198504,8198805-8198907,8199065-8199144,
           8199239-8199321,8199593-8199641,8199736-8199801,
           8200118-8200167,8200299-8200423,8200568-8200683
          Length = 291

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 4   KSACPWLLRLAWLSRQHHPPKRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQL 183
           KS  P +LRLAW     +      G P+G+   +FP + S    +G   A D+     Q 
Sbjct: 29  KSCAPIMLRLAWHDAGTYDKATKTGGPNGS--IRFPQEYSHAANAGIKIAIDLLEPMKQK 86

Query: 184 VP 189
            P
Sbjct: 87  HP 88


>12_01_1019 -
           10398880-10399314,10399401-10399481,10399560-10399652,
           10399784-10399999,10403837-10403935,10404244-10404867,
           10404946-10405033,10405167-10405430,10406437-10406504
          Length = 655

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 46  RQHHP-PKRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQL 183
           R H P P R   S S N +QQ   + ++   +   Q + +  QQ+QL
Sbjct: 549 RGHGPKPNRRASSTSANTYQQMEEELASTKQTAAVQQNQLAVQQNQL 595


>12_02_0870 -
           23852923-23853228,23853416-23853728,23853813-23853938,
           23854038-23854243,23854311-23854443,23854607-23854688,
           23854785-23854914,23855034-23855126,23855211-23855333,
           23855786-23855977,23858230-23858394,23858697-23858768,
           23858826-23858945,23859873-23859949,23860032-23860398,
           23860738-23861871
          Length = 1212

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 116 CDGNC*WRFPLGEPLWRFGGWCWRESH 36
           CD +C   F  G P+W +  WC R  H
Sbjct: 164 CDESCNGAFLAGSPIW-YCMWCQRLVH 189


>06_01_0227 - 1733119-1734099
          Length = 326

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 451 GFH-WRSRYGDAVDGVGESDD*IGESHA 371
           GF  WR  YG A DGV      I E HA
Sbjct: 104 GFERWRKIYGSATDGVNRVQLDIREGHA 131


>05_04_0312 -
           20123892-20124085,20124183-20124508,20124728-20124732,
           20125063-20125670,20125744-20125884,20126067-20126194,
           20126288-20126329,20126613-20126755
          Length = 528

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 271 GEPLWRSVDGVGESVD 224
           GEPLW   +GV  SVD
Sbjct: 79  GEPLWEHAEGVERSVD 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,546
Number of Sequences: 37544
Number of extensions: 240006
Number of successful extensions: 605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)