Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021926X
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   29   2.4  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   27   7.3  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)                 27   9.6  

>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 248 HRAP*RLP*WKPPSAISVTSFNFTHIRLIP 337
           H++P RLP W P   +  + FN TH RL P
Sbjct: 215 HQSPERLPSWSP---VRQSPFNKTHRRLSP 241


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 34  AWLSRQHHPPKRHNGSPSGNRHQQFPSQASTLPISGKFQAHDI 162
           A LS    PP++++G+P  +      S +S+   SG    H +
Sbjct: 388 ALLSSPRTPPQQYSGTPHSSLQGSRTSYSSSTSFSGNSSTHSV 430


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 269 P*WKPPSAISVTSFNFT 319
           P W+PP A+ V +F+FT
Sbjct: 52  PDWQPPFAVDVENFHFT 68


>SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)
          Length = 276

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 356 IPYFSSMAFTNLVVTLANTIHRVAITAPPMET 451
           I Y +S+ FT+L+ T+ANT+     + P M T
Sbjct: 7   ISYTASVLFTSLLSTVANTLIIYVNSKPRMRT 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,201,480
Number of Sequences: 59808
Number of extensions: 244381
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)