Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021926X
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   6.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.3  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +1

Query: 40  LSRQHHPPKRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQ 180
           +S      K  NG  S   HQQ     ST P   + QA     QQ Q
Sbjct: 792 MSEDKRLSKSVNGDQSQPPHQQLHHHQSTHP-QAQAQAQPQQQQQQQ 837


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 76  GSPSGNRHQQFPSQASTLPISGKFQAHDINNQ 171
           G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 64  KRHNG-SPSGNRHQQFPSQASTLP 132
           ++HN  SP+G+  Q   S AST P
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSP 80


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 335 PSSCKILIPYFSSMAFTNLV 394
           PS+  ILI YF  + F +LV
Sbjct: 12  PSTSFILINYFIFLYFNSLV 31


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 49  QHHPPKRHNGSPSGNRHQ 102
           QHHP + H    S   HQ
Sbjct: 320 QHHPSQYHPHRGSSPHHQ 337


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 40   LSRQHHPPKRHNGSPSGNRHQQFP 111
            L  QH PP    G+ S  + QQ P
Sbjct: 1263 LMLQHAPPAYSCGTVSVPQQQQLP 1286


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP
          synthase 16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 82 GSRYGVSVDGVGVKAM 35
          G+ YG +  G G+ AM
Sbjct: 28 GAAYGTAKSGTGIAAM 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,455
Number of Sequences: 438
Number of extensions: 2172
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)