Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021926X
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    28   2.6  
At4g03660.1 68417.m00501 hypothetical protein similar to A. thal...    28   3.4  
At1g67035.1 68414.m07623 expressed protein ; expression supporte...    27   4.5  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    27   5.9  
At3g09640.1 68416.m01143 L-ascorbate peroxidase 1b (APX1b) ident...    27   5.9  
At2g19670.1 68415.m02299 protein arginine N-methyltransferase, p...    27   5.9  

>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 49  QHHPPKRHNGSPSGNRHQQFPSQASTLP 132
           Q  PPK  N SPS + H Q P+  S  P
Sbjct: 772 QSPPPKGCNDSPSNDHHYQTPTPPSLPP 799


>At4g03660.1 68417.m00501 hypothetical protein similar to A.
           thaliana hypothetical protein T6P5.8, GenBank accession
           number AC005970
          Length = 100

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 19  WLLRLAWLSRQHHPPKRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGF 195
           W + + +LS  +HPPK H    +   H +  S    L I    +   +  Q S+L+  F
Sbjct: 16  WKINVKFLSICNHPPKSHGEITTMILHDEKTSSIRVLRIGNMSRMQGVWCQISRLLRNF 74


>At1g67035.1 68414.m07623 expressed protein ; expression supported
           by MPSS
          Length = 229

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 127 KLKLVMEIADGGFH*GSRYG 68
           KLKL+++  D GF  GSRYG
Sbjct: 26  KLKLLVDNGDYGFERGSRYG 45



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 315 KLKLVTEIADGGFH*GSRYG 256
           KLKL+ +  D GF  GSRYG
Sbjct: 26  KLKLLVDNGDYGFERGSRYG 45


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 58  PPKRHNGSPSGNRHQQFPSQASTLP 132
           PP   N  P    HQ  P QA+T P
Sbjct: 877 PPSLSNKPPLAQNHQPVPGQATTRP 901


>At3g09640.1 68416.m01143 L-ascorbate peroxidase 1b (APX1b)
           identical to ascorbate peroxidase [Arabidopsis thaliana]
           gi|555576|emb|CAA56340;
          Length = 251

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   QKSACPWLLRLAWLSRQHHPPKRHNGSPSGN-RHQQ 105
           +K   P +LRLAW S      K   G P G  RH Q
Sbjct: 30  EKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQ 65


>At2g19670.1 68415.m02299 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 1 [Homo sapiens] GI:7453577
          Length = 366

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 35  HGFHANTIHRNAITAPLVETAISN 106
           +GF  + I R AIT PLV+T   N
Sbjct: 215 YGFDMSCIKRRAITEPLVDTVDGN 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,495,984
Number of Sequences: 28952
Number of extensions: 183980
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)