Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021925
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)                 41   8e-04
SB_31211| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.055
SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    29   4.8  
SB_24369| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
          Length = 194

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 21/49 (42%), Positives = 31/49 (63%)
 Frame = +3

Query: 501 SK*HVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPDPRQQRDL 647
           +K H + QER E+  F++A+MAT VM+   N+L  +  V P  R+ RDL
Sbjct: 23  NKEHESKQEREEKKGFIEAVMATDVMKLTHNYLVHERLV-PKSREPRDL 70


>SB_31211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +3

Query: 501 SK*HVTPQERNEENAFMDAIMATSVMRHLMNFL 599
           +K H + QER E+  F++A+MAT VM+   N+L
Sbjct: 80  NKEHESKQEREEKKGFIEAVMATDVMKLTHNYL 112


>SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 372 KEIIYRLIQTSKRMAAKYIISGMEYSNNRKNCPTLGQLRKKHV 500
           + I+  L+   +   +KY+IS  E+S+  KN   L Q R KHV
Sbjct: 79  ERILCELLSVDRFNLSKYLISDKEFSHYGKNILHLKQGRGKHV 121


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 290  REHNKNYNPILNTDFLLHESGGIPNTP---KRDNLPTNTNIETNGC*IYHQRH 439
            ++H  + NP++  +   H++  +P TP   K  +LPT   I  +    ++Q+H
Sbjct: 1436 QQHQTSPNPVITNNTHHHQTQSLPTTPNITKNQSLPTTPTITKHS---HYQQH 1485


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 539 KCVYGRHHGHKCYEAFNEFFERKR 610
           K +YG H GH C+E  +E  ER+R
Sbjct: 557 KKIYGAHKGHSCFEV-HEAEERER 579


>SB_24369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 552 DAIMATSVMRHLMNFLKEKGYVTPDPRQQRDL*SSSGLVVLEGK 683
           +A+    V+  L+N +KEK YV  DP  Q    S   L +L  K
Sbjct: 105 NALTEVCVLSDLLNVVKEKKYVVLDPVSQSQAISKPTLQLLAKK 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,021,197
Number of Sequences: 59808
Number of extensions: 510020
Number of successful extensions: 1394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)