Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021925
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104793-1|AAI04794.1|  594|Homo sapiens nucleolar protein 5A pr...    31   5.2  
BC104791-1|AAI04792.1|  594|Homo sapiens nucleolar protein 5A (5...    31   5.2  
BC004937-1|AAH04937.1|  174|Homo sapiens NOL5A protein protein.        31   5.2  
AL049712-4|CAC01444.2|  594|Homo sapiens nucleolar protein 5A (5...    31   5.2  
AF265555-1|AAF75772.1| 4829|Homo sapiens ubiquitin-conjugating B...    30   9.1  

>BC104793-1|AAI04794.1|  594|Homo sapiens nucleolar protein 5A
           protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +3

Query: 387 RLIQTSKRMAAKYIISGMEYSNNRKNCPTLGQLRKKHVSK*HVTPQERNEENAFMDAIMA 566
           RL +  KR+AA  + S    S+  + C  + +  KK   +    PQE  +EN   D  ++
Sbjct: 446 RLKKEKKRLAALALASSENSSSTPEECEEMSEKPKKKKKQ---KPQEVPQENGMEDPSIS 502

Query: 567 TSVMRHLMNFLKEK 608
            S  +   +F KE+
Sbjct: 503 FSKPKKKKSFSKEE 516


>BC104791-1|AAI04792.1|  594|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +3

Query: 387 RLIQTSKRMAAKYIISGMEYSNNRKNCPTLGQLRKKHVSK*HVTPQERNEENAFMDAIMA 566
           RL +  KR+AA  + S    S+  + C  + +  KK   +    PQE  +EN   D  ++
Sbjct: 446 RLKKEKKRLAALALASSENSSSTPEECEEMSEKPKKKKKQ---KPQEVPQENGMEDPSIS 502

Query: 567 TSVMRHLMNFLKEK 608
            S  +   +F KE+
Sbjct: 503 FSKPKKKKSFSKEE 516


>BC004937-1|AAH04937.1|  174|Homo sapiens NOL5A protein protein.
          Length = 174

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +3

Query: 387 RLIQTSKRMAAKYIISGMEYSNNRKNCPTLGQLRKKHVSK*HVTPQERNEENAFMDAIMA 566
           RL +  KR+AA  + S    S+  + C  + +  KK   +    PQE  +EN   D  ++
Sbjct: 26  RLKKEKKRLAALALASSENSSSTPEECEEMSEKPKKKKKQ---KPQEVPQENGMEDPSIS 82

Query: 567 TSVMRHLMNFLKEK 608
            S  +   +F KE+
Sbjct: 83  FSKPKKKKSFSKEE 96


>AL049712-4|CAC01444.2|  594|Homo sapiens nucleolar protein 5A
           (56kDa with KKE/D repeat) protein.
          Length = 594

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +3

Query: 387 RLIQTSKRMAAKYIISGMEYSNNRKNCPTLGQLRKKHVSK*HVTPQERNEENAFMDAIMA 566
           RL +  KR+AA  + S    S+  + C  + +  KK   +    PQE  +EN   D  ++
Sbjct: 446 RLKKEKKRLAALALASSENSSSTPEECEEMSEKPKKKKKQ---KPQEVPQENGMEDPSIS 502

Query: 567 TSVMRHLMNFLKEK 608
            S  +   +F KE+
Sbjct: 503 FSKPKKKKSFSKEE 516


>AF265555-1|AAF75772.1| 4829|Homo sapiens ubiquitin-conjugating
            BIR-domain enzyme APOLLON protein.
          Length = 4829

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 343  RKRRNPQYTEKR*FTD*YKHRNEWLLNISSAAWNIPTIEKIVP 471
            ++RR+PQ+  ++   D  +H   W L   S +W+    E ++P
Sbjct: 1026 QQRRHPQHLHQQHHGDAAQHTRTWKLQTDSNSWDEHVFELVLP 1068


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,266,490
Number of Sequences: 237096
Number of extensions: 2401242
Number of successful extensions: 4149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4149
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)