Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021925
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          26   0.39 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.5  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 581 PHNTCGHDGVHKRIFLVSFLWRYMSFTNVLLS*LSKSGTIFSIVGI 444
           P  T    G+H++  L+S  W Y     V    LS + TI S+V I
Sbjct: 52  PAQTTSKAGIHRKKVLLSVWWDYKGI--VYFELLSPNRTINSVVYI 95


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 581 PHNTCGHDGVHKRIFLVSFLWRYMSFTNVLLS*LSKSGTIFSIVGI 444
           P  T    G+H++  L+S  W Y     V    L  + TI S+V I
Sbjct: 174 PAQTTSKAGIHRKKVLLSVWWDYKGI--VYFELLPPNRTINSVVYI 217


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 347 SGGIPNTPKRDNLPTNTN 400
           S  IP  P   N+P NTN
Sbjct: 761 SVSIPPPPSAQNVPQNTN 778


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 202 ISVCVPYTITFIPYLASRKKI 140
           I +C P  +  + YL ++KK+
Sbjct: 64  IKICAPGCVCRLGYLRNKKKV 84


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 202 ISVCVPYTITFIPYLASRKKI 140
           I +C P  +  + YL ++KK+
Sbjct: 64  IKICAPGCVCRLGYLRNKKKV 84


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 167 NERDSIWNTNGYC*STLTKEVRPARDASCFA 259
           NE D  + T GY    + K+ RP   A  ++
Sbjct: 209 NEIDKFYGTPGYTAPEVIKQNRPTPAADIYS 239


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 513 VTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPDPRQQRDL*SSSGLVVLEG 680
           +TP++ ++    MD++     +      ++E+ Y   +  Q  +  SS+   VLEG
Sbjct: 155 ITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQVEISQMTEPSSSTKSYVLEG 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,750
Number of Sequences: 438
Number of extensions: 4923
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)