Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021925
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19360.1 68417.m02851 expressed protein                             29   3.9  
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin...    29   3.9  
At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At3g24517.1 68416.m03078 hypothetical protein                          28   5.1  
At3g18720.1 68416.m02377 F-box family protein contains Pfam PF00...    27   9.0  
At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 fam...    27   9.0  

>At4g19360.1 68417.m02851 expressed protein
          Length = 268

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 93  TLVNNENEVSYNVMCFIFLREAKYGM-NVIVYGTQ 194
           TL+ N +     ++CF+ L+E+  G+ NV+ YGT+
Sbjct: 33  TLIANFDIRYEGILCFLNLQESTLGLQNVVCYGTE 67


>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
           1 [Arabidopsis thaliana] Swiss-Prot:Q42525
          Length = 493

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 402 SKRMAAKYIISGMEYSNNRKNCPTLGQLRKKHVSK*HVTPQERNEENAFMD 554
           S R  + YI+     SN+   CP L + +K   +    TP  RN  NA  D
Sbjct: 20  SSRPRSNYIVMSAVRSNSASTCPILTKFQKDCATP---TPYLRNVANAIAD 67


>At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 871

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 506 FTNVLLS*LSKSGTIFSIVGIFH---AADDIFSSHSFRCLY*SVNYLFSVYWG 357
           F N+L++ L+KSG     +G+F    ++     S++F C+  S + L SV+ G
Sbjct: 162 FWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGG 214


>At3g24517.1 68416.m03078 hypothetical protein
          Length = 163

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 513 VTPQERNEENA-FMDAIMATSVMRHLMNFLKEKGYVTPDPRQQRDL*SSSGLVVLEG 680
           +T   R + NA F+ +     V R   N+LK+ G    DPR    L S++   +LEG
Sbjct: 106 ITAPWRRDHNADFLQSFNYKGVRRRFSNYLKKVGNFFGDPRDM-SLNSTADAGLLEG 161


>At3g18720.1 68416.m02377 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 380

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -3

Query: 353 RRFREAENRCLK*GCNFYCVHDLKRRAVLTRVRNSWR--PVQAELPLSGSINNIRLCSIY 180
           +R+ E  NRC+     FYC+    R +V    R +W   PV+        I  +R   + 
Sbjct: 224 KRYGEVINRCIFSNGMFYCLSTSGRLSVFDPSRETWNVLPVKPCRAFRRKIMLVRQVFMT 283

Query: 179 YHVHSVFGFT 150
            H   +F  T
Sbjct: 284 EHEGDIFVVT 293


>At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 807

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -3

Query: 389 SVNYLFSVYWGFRRFREAENRCLK*GCNFYCVHDLKRRAVLTRVRNSWRPVQAELPLSGS 210
           S+N+ +  Y+G+  F++ +N C       Y ++ +     L+R+    R +  E  L   
Sbjct: 586 SINF-YICYYGWGDFKKRQNTCEASEIYIYSLYIVASLPYLSRLLQCMRRMIEERSLDQG 644

Query: 209 INNIR--LCSIYYHVHSVFGFT*KN 141
            N ++  L  I   + + +G+  KN
Sbjct: 645 YNGVKYLLTVIAVSLRTAYGYEVKN 669


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,891,792
Number of Sequences: 28952
Number of extensions: 342277
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)