Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021924
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.50 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.50 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.6  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   6.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 122 ITVSSFFVQFFNVYC 78
           ++ SSFF QFF+ YC
Sbjct: 413 LSCSSFFQQFFHCYC 427


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 398 VYNCCEIQID*T*TCLLNIPPVITHM 321
           ++  CE+ I+ T + L+N+P +I H+
Sbjct: 420 IFVLCELLIEGTTSILINVPSLIIHV 445


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 326 HMKFFFVRFYFYCTMLFL 273
           H+ F    +YFYC ++ L
Sbjct: 278 HLLFLLCIYYFYCALIIL 295


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 523 FNFTCKDYTQYEFCTI 570
           F F C  +T++EF T+
Sbjct: 441 FPFICNSFTKFEFNTV 456


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +1

Query: 469 IYNLIVITI---NIQYFLLNPFNFTCKDY 546
           I+NL+ +     N   FL   F   CKDY
Sbjct: 154 IFNLVYVYCCDNNFNVFLRQVFTCRCKDY 182


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 359 FRFNQSEFHNNYTHIYMAFIIIQILI 436
           + FN++  H+    +Y  F+I   L+
Sbjct: 424 YNFNENTIHSKLCKLYATFLIALKLV 449


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/51 (23%), Positives = 18/51 (35%)
 Frame = +1

Query: 511  LLNPFNFTCKDYTQYEFCTIRHRYSYKYTC*IFPEQKILIAAKEAITSKKP 663
            LL+P  F C  Y    + T+   Y       +F    +    +E     KP
Sbjct: 993  LLHPQEFNCLKYGVIYYVTVPSMYLLLVIYSVFNMNNVSWGTREVTVVPKP 1043


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/51 (23%), Positives = 18/51 (35%)
 Frame = +1

Query: 511  LLNPFNFTCKDYTQYEFCTIRHRYSYKYTC*IFPEQKILIAAKEAITSKKP 663
            LL+P  F C  Y    + T+   Y       +F    +    +E     KP
Sbjct: 993  LLHPQEFNCLKYGVIYYVTVPSMYLLLVIYSVFNMNNVSWGTREVTVVPKP 1043


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,450
Number of Sequences: 336
Number of extensions: 3952
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)