Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021924
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0116 + 14805972-14806511,14807095-14807232,14809906-14810352     28   7.1  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    28   7.1  

>09_04_0116 + 14805972-14806511,14807095-14807232,14809906-14810352
          Length = 374

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 260 YFHGKGITSCNKNKNGQ 310
           Y HGKGI  CN +K  Q
Sbjct: 86  YLHGKGIFQCNSDKGSQ 102


>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 565 TIRHRYSYKYTC*IFPEQKI-LIAAKEAITSKKPFCSQLHH 684
           +++HR+ Y YT  +FP+Q +  +A      S   F SQL++
Sbjct: 7   SLQHRHRYTYTSLVFPKQYLEELARVPTEVSSSSFFSQLNN 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,372
Number of Sequences: 37544
Number of extensions: 311408
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)