Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021924
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41557-7|AAQ01534.1|  381|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC090999-23|AAP46263.1|  179|Caenorhabditis elegans Hypothetical...    28   6.4  
AC090999-22|AAK26159.1|  481|Caenorhabditis elegans Hypothetical...    28   6.4  
AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine re...    28   6.4  

>Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical
           protein M176.2 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -3

Query: 463 HDSCTARNRYKYLNNNKSHINMCIIVVKFRLIKPKPAYLIYHQ**RI*NFFLSVFIFIAR 284
           HD   A      L+ +K    +C       L  P P   ++ +   I N F S++ FIA 
Sbjct: 31  HDWAHANGLVMRLSTDKLSSEVCQTTPLTLLPSPFPKN-VFEEAVHIQNLFASLYHFIAY 89

Query: 283 CYSFTVEVNRNI 248
            + F +++++N+
Sbjct: 90  EFDFLIDIHKNV 101


>U41557-7|AAQ01534.1|  381|Caenorhabditis elegans Hypothetical
           protein C50F7.1b protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -1

Query: 702 CEPTSLVVKLRAEWFFGSDSFFSR-DQYFLFGENLASIFVAIPVTYCAKFVLCIIFTSKI 526
           C PT+L+  +  EW +G   FF R   +     + AS++  + VT      +C       
Sbjct: 82  CLPTTLINSIFTEWLWG--QFFCRLSTWANASTSFASVYTLVAVTADRYLAICHTLKYNT 139

Query: 525 EW 520
            W
Sbjct: 140 SW 141


>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 639 FSRDQYFLFGENLASIFVAIPVTYCAKFVLCIIF 538
           FS+D  FL   NL S FV   V  CA    C +F
Sbjct: 63  FSKDSVFLIIINLNSTFVPEFVATCATVAYCSLF 96


>AC090999-23|AAP46263.1|  179|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.17b protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 203 CGIRKPGVLSIRP*RLQIVCLVILVK*ITVSSFFVQFFNVYCRECYWEVD 54
           C I K G+   +    QIVC     K ITV+SF + F   Y +   W+ D
Sbjct: 110 CVIDKEGLEQAKDNGFQIVCTKCAFKCITVTSFNLHF---YFKHADWDND 156


>AC090999-22|AAK26159.1|  481|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.17a protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 203 CGIRKPGVLSIRP*RLQIVCLVILVK*ITVSSFFVQFFNVYCRECYWEVD 54
           C I K G+   +    QIVC     K ITV+SF + F   Y +   W+ D
Sbjct: 412 CVIDKEGLEQAKDNGFQIVCTKCAFKCITVTSFNLHF---YFKHADWDND 458


>AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein52 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
 Frame = -1

Query: 714 YMASCEPTSLVVKLRAEWFFGSDSFFSRDQYFLFGENLASIFVAIPVTYCAK---FVLCI 544
           +++SC  T L+V  R      SD    R   FLF  N   I   IP+ Y      F   I
Sbjct: 119 WVSSCAWTLLLVINRI-----SDMIAPRISDFLFSGNRTWIVALIPIPYTLSVMFFTPAI 173

Query: 543 IFTSKI-EWI**KILY---INCYYNQI 475
           IF S +  WI   ++Y      YYN I
Sbjct: 174 IFNSTVMAWIGDPLIYEERAQDYYNPI 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,372,103
Number of Sequences: 27780
Number of extensions: 335725
Number of successful extensions: 741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)