Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021924
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.59 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 122 ITVSSFFVQFFNVYC 78
           ++ SSFF QFF+ YC
Sbjct: 417 LSCSSFFQQFFHCYC 431


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -2

Query: 758 LKNHHEIHCDRIAIN--TWLRVNR 693
           LK+H++I+C++   N  T+LR+ +
Sbjct: 155 LKSHNDIYCEKYEKNGETYLRIKK 178


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 442 NRYKYLNNNKSHINMC 395
           N YKY  NN ++ N C
Sbjct: 94  NNYKYNYNNNNYNNNC 109


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 442 NRYKYLNNNKSHINMC 395
           N YKY  NN ++ N C
Sbjct: 94  NNYKYNYNNNNYNNNC 109


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 442 NRYKYLNNNKSHINMC 395
           N YKY  NN ++ N C
Sbjct: 94  NNYKYNYNNNNYNNNC 109


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 442 NRYKYLNNNKSHINMC 395
           N YKY  NN ++ N C
Sbjct: 94  NNYKYNYNNNNYNNNC 109


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -2

Query: 227 FIRMICSCC 201
           F+R++C+CC
Sbjct: 401 FVRILCACC 409



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 490 LLQSNCIFNHDSCTARNRYKYLNNNKSHINMCII 389
           +L++  +F  D C        L +  S +N+C+I
Sbjct: 107 VLENRWLFTTDWCDVWRSLDVLFSTASILNLCVI 140


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 716 NTWLRVNRRH 687
           NTWLRVN  +
Sbjct: 435 NTWLRVNENY 444


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 716 NTWLRVNRRH 687
           NTWLRVN  +
Sbjct: 435 NTWLRVNENY 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,325
Number of Sequences: 438
Number of extensions: 4566
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)