Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021924
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14030.1 68416.m01771 hypothetical protein                          31   1.1  
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    29   4.5  

>At3g14030.1 68416.m01771 hypothetical protein 
          Length = 200

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 687 LVVKLRAEWFFGSDSFFSRDQYFLFGENLASIFVAIPVTYCAKFVLCIIFTSK 529
           ++  L  + F+G+  F+++++  + GE +    V +  TY   F+LC  FT++
Sbjct: 1   MITSLSKQSFWGNTYFYAQEKATVEGEGMEE--VDVDTTYLPVFLLCFDFTAE 51


>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 413 KPYKYVYNC--CEIQID*T*TCLLNIPP 336
           KP KY Y+C  C+I++D   TC +N PP
Sbjct: 89  KPAKYFYSCSTCKIKVD--LTCGMNPPP 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,334
Number of Sequences: 28952
Number of extensions: 286389
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)