Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021922
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.6
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 2.6
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 27 3.4
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 26 4.5
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 23 7.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 7.9
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 7.9
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 7.9
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 7.9
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 7.9
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 263 KQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNEN-KLDWFNVTDDGAACMEDIQNEI 439
++ D +G +E+ ENN PPP + ++ E+ KLD + +ED+ E
Sbjct: 4053 EEMSDDVGIDDEIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLEDMDMEA 4112
Query: 440 ANIDLKETKWNPDAP 484
A+ + +E D P
Sbjct: 4113 ADENKEEADAEKDEP 4127
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 42 VEVAPLQGQVTDSIPSSILPIENIHSAP 125
++++P++ +IPSS P NI SAP
Sbjct: 685 MKISPIRASPVKTIPSSPSPTTNIFSAP 712
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 9 RLVRSMRGSTIVEVAPLQGQVTDSIPSSILPIENIHSAPFCKMFSANK 152
R+ +S+RG + V+P GQV D + ++ I SA CK SA K
Sbjct: 43 RIKQSVRGCDVYIVSPASGQVNDHLMELLIMI----SA--CKTASAKK 84
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +2
Query: 257 MLKQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENKLDWF 388
++ + ++ + +LK ++NN P I+ K ++ + KLD+F
Sbjct: 206 LIDRDSNRTKHDSRILKDSIKNNWPEPKIIRCKIDIKDLKLDFF 249
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 23.0 bits (47), Expect(2) = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 446 IDLKETKWNPDAPEFSLN 499
+D K+ K PDAP F+ N
Sbjct: 84 VDWKQEKPKPDAPSFADN 101
Score = 20.6 bits (41), Expect(2) = 7.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 347 YEKQEVNENKLDW 385
Y E +ENK+DW
Sbjct: 74 YFPPEFDENKVDW 86
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 174 KRVRNEIETQILEEIDTTEIVYLEQALKCLNRKKIKLDKK 293
++V + + ++LEEI+ E+ LK + K+ K DKK
Sbjct: 562 EKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKK 601
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 263 KQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENK 376
K+K+DK+ +K++ LK+D + + V +K+ +K
Sbjct: 151 KEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSK 188
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 77 FYPLIYFANREY 112
FYP+I+F N+EY
Sbjct: 164 FYPVIFFPNKEY 175
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +3
Query: 147 NKHQI----HEILKRVRNEIETQILEEIDTTEIVYLEQALKCLNRKKIKLDKKM 296
N HQ+ EILKR RNE +I E D E+ L A R+ L+++M
Sbjct: 291 NAHQLLEKKFEILKRERNECNAKIDELQDKLEL--LTDAYNREKRRARSLEERM 342
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 269 KEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENKLDWFNVTDDGAACMEDIQNEIANI 448
K+ + ++ + L+ + E P + KQ+V + KL+ F GA + IA++
Sbjct: 438 KKFALHERIQALEKQLGEKEAPSQVAGLKQQVEQLKLEPFKYHHQGALAYVGDEKAIADL 497
Query: 449 DL 454
L
Sbjct: 498 KL 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,393
Number of Sequences: 5004
Number of extensions: 55086
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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