BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021922 (699 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 30 2.0 12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157... 29 4.7 04_01_0605 + 7944514-7944637,7944930-7945198,7945467-7945559,794... 29 4.7 05_06_0084 - 25435650-25436600 28 6.2 01_06_0613 + 30615335-30615980,30616072-30616231,30616350-306163... 28 8.2 >08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560, 4683834-4684204,4684290-4684835,4684927-4685027, 4685117-4685933,4686025-4686213,4686313-4686384, 4686477-4686587,4686647-4686652,4686694-4686794, 4687714-4687813,4687891-4687986,4688157-4688273, 4688367-4688492,4688566-4688619,4688745-4688992, 4689087-4689195,4689284-4689583,4689799-4689963 Length = 2240 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +2 Query: 263 KQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENKLDWFNVTDDGA 409 K K DK G+K+ K +VE EV PP + ++ N+ V DDG+ Sbjct: 131 KDKSDKSGRKSN--KDEVEPGEVAPPDKKQDRDHNKKLGSSAQVRDDGS 177 >12_02_1262 + 27415191-27415279,27415367-27415565,27415635-27415775, 27415939-27416003,27416111-27416489,27416688-27417149, 27417226-27417546,27418184-27418501 Length = 657 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 526 QDGINDVFLSETDNTDTNKYI 588 +DGI+ + SETDN D NK I Sbjct: 253 KDGISSITSSETDNDDVNKSI 273 >04_01_0605 + 7944514-7944637,7944930-7945198,7945467-7945559, 7945824-7945958,7946448-7946538,7947837-7947929, 7948418-7948578,7948589-7948675 Length = 350 Score = 28.7 bits (61), Expect = 4.7 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +3 Query: 81 IPSSILPIENIH-SAPFCKMFSANKHQIHEILKRVRNEIETQILEEI 218 IPSSI + N+ A + K+ +N IHE + + E Q +EE+ Sbjct: 188 IPSSIERVHNVDLMAGYAKLIRSNIRSIHESMDSCACDSEHQNVEEV 234 >05_06_0084 - 25435650-25436600 Length = 316 Score = 28.3 bits (60), Expect = 6.2 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -3 Query: 442 CYFILNIFHTSSSIVSNIKPIKFVFINLLLFIHNRRR 332 CY LN IV + + F +INL L + RRR Sbjct: 276 CYLALNADEHHDCIVKVFRQVWFEYINLHLHLSRRRR 312 >01_06_0613 + 30615335-30615980,30616072-30616231,30616350-30616398, 30617561-30617674,30617975-30618031,30618227-30618337 Length = 378 Score = 27.9 bits (59), Expect = 8.2 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = +3 Query: 135 MFSANKHQIHEILKRVRNEIETQILEEIDTTEIVYLEQALKCLNRKKIKLDKKM 296 M SA+ +++ LK E I+EE+D + Y+E+ + L + +I +KKM Sbjct: 288 MLSASANKLSR-LKEQAEEYAALIMEELDPEGLGYIERQGQLLAKGRIIHNKKM 340 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,626,411 Number of Sequences: 37544 Number of extensions: 289841 Number of successful extensions: 770 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 745 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 770 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1792053856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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