Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021922
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468...    30   2.0  
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157...    29   4.7  
04_01_0605 + 7944514-7944637,7944930-7945198,7945467-7945559,794...    29   4.7  
05_06_0084 - 25435650-25436600                                         28   6.2  
01_06_0613 + 30615335-30615980,30616072-30616231,30616350-306163...    28   8.2  

>08_01_0539 +
           4679392-4681282,4682060-4682104,4682403-4683560,
           4683834-4684204,4684290-4684835,4684927-4685027,
           4685117-4685933,4686025-4686213,4686313-4686384,
           4686477-4686587,4686647-4686652,4686694-4686794,
           4687714-4687813,4687891-4687986,4688157-4688273,
           4688367-4688492,4688566-4688619,4688745-4688992,
           4689087-4689195,4689284-4689583,4689799-4689963
          Length = 2240

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 263 KQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENKLDWFNVTDDGA 409
           K K DK G+K+   K +VE  EV PP   + ++ N+       V DDG+
Sbjct: 131 KDKSDKSGRKSN--KDEVEPGEVAPPDKKQDRDHNKKLGSSAQVRDDGS 177


>12_02_1262 +
           27415191-27415279,27415367-27415565,27415635-27415775,
           27415939-27416003,27416111-27416489,27416688-27417149,
           27417226-27417546,27418184-27418501
          Length = 657

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 526 QDGINDVFLSETDNTDTNKYI 588
           +DGI+ +  SETDN D NK I
Sbjct: 253 KDGISSITSSETDNDDVNKSI 273


>04_01_0605 +
           7944514-7944637,7944930-7945198,7945467-7945559,
           7945824-7945958,7946448-7946538,7947837-7947929,
           7948418-7948578,7948589-7948675
          Length = 350

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 81  IPSSILPIENIH-SAPFCKMFSANKHQIHEILKRVRNEIETQILEEI 218
           IPSSI  + N+   A + K+  +N   IHE +     + E Q +EE+
Sbjct: 188 IPSSIERVHNVDLMAGYAKLIRSNIRSIHESMDSCACDSEHQNVEEV 234


>05_06_0084 - 25435650-25436600
          Length = 316

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 442 CYFILNIFHTSSSIVSNIKPIKFVFINLLLFIHNRRR 332
           CY  LN       IV   + + F +INL L +  RRR
Sbjct: 276 CYLALNADEHHDCIVKVFRQVWFEYINLHLHLSRRRR 312


>01_06_0613 +
           30615335-30615980,30616072-30616231,30616350-30616398,
           30617561-30617674,30617975-30618031,30618227-30618337
          Length = 378

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 135 MFSANKHQIHEILKRVRNEIETQILEEIDTTEIVYLEQALKCLNRKKIKLDKKM 296
           M SA+ +++   LK    E    I+EE+D   + Y+E+  + L + +I  +KKM
Sbjct: 288 MLSASANKLSR-LKEQAEEYAALIMEELDPEGLGYIERQGQLLAKGRIIHNKKM 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,626,411
Number of Sequences: 37544
Number of extensions: 289841
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)