Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021922
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59639| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)             35   0.055
SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)                    28   6.3  
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 28   6.3  
SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_59639| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)
          Length = 576

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 618 YFYFYQAEDGQQVFWNSLNVRIL 686
           ++YFYQA+DGQ +F + +N R L
Sbjct: 391 FYYFYQADDGQNIFLHPINARCL 413


>SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)
          Length = 258

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/66 (31%), Positives = 38/66 (57%)
 Frame = +2

Query: 302 LKIDVENNEVPPPIVYEKQEVNENKLDWFNVTDDGAACMEDIQNEIANIDLKETKWNPDA 481
           + I  E N+VP   +  ++EVN+  +D  NV ++    M D+   + +I+++E + N D 
Sbjct: 185 INIQEEMNDVPVGGINIQEEVNDVPVDSINVQEE----MNDV--PVGSINIQE-EMN-DV 236

Query: 482 PEFSLN 499
           PE S+N
Sbjct: 237 PEGSIN 242


>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 302 LKIDVENNEVPPPIVYE-KQEVNENKLDWFNVTDDGAACMEDIQNEIANIDL-KETKWNP 475
           ++I+ +N+E PPP + E K E N  K      TD   A   + + + + ID+ K  K   
Sbjct: 276 VEIEEDNDEKPPPEIEEQKPEANNEKP---TNTDVPEATKPENKQQTSGIDVAKSRKSEV 332

Query: 476 DAPEFSLNE 502
             PE S+ E
Sbjct: 333 PQPEVSIPE 341


>SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 114 HSAPFCKMFSAN-KHQIHEILKRVRNEIETQILEEIDTT 227
           H AP    FS N K +IHEILK++ N+    + E  D T
Sbjct: 361 HPAP---QFSGNVKTRIHEILKQLINDANKHVHENRDET 396


>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/67 (17%), Positives = 30/67 (44%)
 Frame = +3

Query: 81   IPSSILPIENIHSAPFCKMFSANKHQIHEILKRVRNEIETQILEEIDTTEIVYLEQALKC 260
            +P  I+   +I   P+         + HE+ KR+   +   + + +   ++++ E   KC
Sbjct: 976  LPRQIVVQSSIEIPPYLYKIPLELGKFHELFKRLGATVTVTVQQYVSVLDMIHKECGNKC 1035

Query: 261  LNRKKIK 281
            ++  + K
Sbjct: 1036 MDPNERK 1042


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,811,404
Number of Sequences: 59808
Number of extensions: 366675
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)