Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021922
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              27   0.23 
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              24   1.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.5  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = +2

Query: 308 IDVENNEVPPPIVYEKQEVNENKLDWFNVTDDGAACMEDIQNEIANIDLKETKWN 472
           IDVEN +V        Q  +E  +  FN  DDG    E +  EIA I L E + N
Sbjct: 52  IDVENEKV--------QLFSECLIKKFNAYDDGGNFNEVVVREIAEIYLDENEVN 98


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 25/70 (35%), Positives = 31/70 (44%)
 Frame = +2

Query: 263 KQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENKLDWFNVTDDGAACMEDIQNEIA 442
           +QKED     N    IDVE+ +V        Q  +E  +  FN  DDG    E +  EIA
Sbjct: 41  QQKEDDFRDGN----IDVEDEKV--------QLFSECLIKKFNGYDDGGNFNEVVIREIA 88

Query: 443 NIDLKETKWN 472
            I L E   N
Sbjct: 89  EIFLDENGVN 98


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 278 KIGQKNEMLKIDVE-NNEVPPPIVYEKQEVNENKLDWFNVTDDG 406
           K+G +   L IDV   N++    V+ +QE N+ KL W N  D G
Sbjct: 49  KMGLRLSQL-IDVNLKNQIMTTNVWVEQEWNDYKLKW-NPDDYG 90


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/33 (21%), Positives = 16/33 (48%)
 Frame = -3

Query: 445 ICYFILNIFHTSSSIVSNIKPIKFVFINLLLFI 347
           +CYF  ++ H    +   +  + F+   LL+ +
Sbjct: 163 VCYFTAHVTHPRHRLCVFVAGVVFIVSGLLMLV 195


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 482 EHQGSIWFLSNQYLLFHFEYLPYKQLH 402
           E +G I+ +SN+  L   EY   K++H
Sbjct: 316 EAEGGIYDISNKRRLGLTEYQAVKEMH 342


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 472 VPFGFFQINICYFILNIFHTSSSIVSNIKPIKFVFINLLLFIHN 341
           +  G   I  C + LNIF  +S  +     ++   IN+  FI N
Sbjct: 149 IGIGNTTIQACPYTLNIFDLTSDKLLRQYRLRAEDINMNTFIAN 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,761
Number of Sequences: 438
Number of extensions: 3572
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)